Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq783 159 4e-34
seq2315 152 6e-32
seq242 116 4e-21
seq1551 107 2e-18
seq779 86.0 7e-12
>seq783
Length=580412
Score = 159 bits (176), Expect = 4e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| | || ||||| || || ||| | || |||||| |
Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| |||| || ||||||||||| |||||||| ||||||||||| |||
Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 391244
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||||||||| ||||| || |||| || ||||| | ||||| ||
Sbjct 391245 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTGTCTGACTACAAC 391304
Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608
| || |||||||||||||| ||
Sbjct 391305 ATTCAGAAGGAATCCACTCTCCA 391327
Score = 145 bits (160), Expect = 9e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || |||||||| || ||||||||| | || || ||| |
Sbjct 390128 AATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTC 390187
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | ||| | || || ||||||||||||||||| || ||||| ||||||||
Sbjct 390188 GGATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 390247
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| | | || |||||||| ||||| |||||||| | || || || |||| || ||
Sbjct 390248 ACAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAA 390307
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || ||||| || || ||||| || || | ||||| |||||
Sbjct 390308 CATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGACTTCGTGGTGG 390355
Score = 120 bits (132), Expect = 3e-22
Identities = 142/191 (74%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || || ||||| || || || ||||| |
Sbjct 387058 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTTGAAGCTTCA 387117
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || |||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 387118 GATACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCTCCAGACCAA 387177
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | |||| |||||||| || ||| | || || | | || || ||||||| |||
Sbjct 387178 CAGAGATTAATCTTTGCTGGCAAACAATTGGAAGACGGAAGAACGCTGTCAGACTACAAT 387237
Query 27586 GTCCA-AAAGG 27595
| || |||||
Sbjct 387238 ATACAGAAAGG 387248
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/191 (72%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || ||||| || || || || ||| | || || ||| |
Sbjct 390357 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCA 390416
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | || || || |||||||||||||| || ||||| ||||||||
Sbjct 390417 GACACGATCGAAAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390476
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || |||||||| ||||| || ||||||| | || || ||||||| |||
Sbjct 390477 CAGAGATTGATCTTTGCTGGCAAGCAGCTAGAGGATGGAAGGACTCTGTCAGACTACAAT 390536
Query 27586 GTCCA-AAAGG 27595
| || |||||
Sbjct 390537 ATTCAGAAAGG 390547
>seq2315
Length=138946
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || || ||||| ||||| | || || || |
Sbjct 32993 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCA 33052
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | || || || ||||| || ||||||||||| ||||||||||||
Sbjct 33053 GATACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAG 33112
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || ||||||||||| || || |||||||||| ||| || || |||| || |||
Sbjct 33113 CAGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAGATTACAAT 33172
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || || || ||||| ||| | || | ||||| || |||||
Sbjct 33173 ATTCAGAAAGAGTCTACTCTGCATTTGGTTCTCCGTCTGCGAGGTGG 33219
Score = 131 bits (144), Expect = 2e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| ||||| || || || || || || || || ||||| || || |
Sbjct 28961 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 29020
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | ||||| || ||||| ||||| || ||||| || |||||||||
Sbjct 29021 GATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAG 29080
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| |||||||||| || || || | || |||| || || || | ||||| |||
Sbjct 29081 CAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGATGGCCGCACACTGTCGGACTACAAT 29140
Query 27586 GTCCAAAAGG 27595
| |||||||
Sbjct 29141 ATTCAAAAGG 29150
Score = 111 bits (122), Expect = 2e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| | || || || ||||| || | || || || ||
Sbjct 27130 AATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATC 27189
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| |||| | || || || || || |||||||| || |||||||| || ||
Sbjct 27190 TGATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCA 27249
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| | || || |||||||||||||| || ||||||| || || || | || || ||
Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAA 27309
Query 27585 TGTCCAAAA 27593
| |||||
Sbjct 27310 CATACAAAA 27318
>seq242
Length=1788442
Score = 116 bits (128), Expect = 4e-21
Identities = 143/194 (74%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|||||||| || || || || || | || || || || ||||| || |||||||| |
Sbjct 1569774 ATAATGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCC 1569833
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
||||| |||| |||| |||| || ||||| || |||||||| || || ||||| ||
Sbjct 1569834 TCTGATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGAT 1569893
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|| ||| | | ||||||||||| ||||| || ||||||| || || || | || |||
Sbjct 1569894 CAACAGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTAT 1569953
Query 27583 AATGTCCA-AAAGG 27595
||| | || |||||
Sbjct 1569954 AATATTCAGAAAGG 1569967
>seq1551
Length=444118
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| | || ||||| || || ||| | || |||||| |
Sbjct 25339 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 25280
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | || || ||||| ||||| |||| ||| || |||||||| |||
Sbjct 25279 GACACAATCGAAAATGTAAAAGCCAAAATCCAGGATAAGGCGGGCATACCTCCAGATCAG 25220
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554
|||||||| || ||||||||||| |||||
Sbjct 25219 CAGCGTCTTATCTTTGCTGGTAAACAACT 25191
Score = 96.9 bits (106), Expect = 4e-15
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
||||||||| |||||| || |||||||||||||| ||| | | || ||||| || |||
Sbjct 25483 AAAATTCAGAGCAAGGAAGGCATTCCTCCAGACCAACAGAGATTGATCTTTGCCGGCAAG 25424
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||||| | || | ||||||| ||| | || || |||||||| ||||||
Sbjct 25423 CAGCTTGAGGATGGAAGAACATTGTCAGACTACAATATTCAGAAAGAATCCACACTTCAT 25364
Query 27610 CTAGTCTTGCG 27620
|| || || ||
Sbjct 25363 CTGGTTTTCCG 25353
>seq779
Length=683570
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
|| ||||| ||||||||||| ||||| || ||||| || ||||| || || |||| ||
Sbjct 345901 GGTATTCCCCCAGACCAGCAACGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGC 345960
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|| | ||||||| ||| |||| || || || ||||||||||| ||
Sbjct 345961 ACTTTGTCAGACTACAATATCCAGAAAGAGTCGACTCTTCATCTGGT 346007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570133660807040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |