Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq783 159 4e-34 seq2315 152 6e-32 seq242 116 4e-21 seq1551 107 2e-18 seq779 86.0 7e-12 >seq783 Length=580412 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || ||||| || || ||| | || |||||| | Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| |||| || ||||||||||| |||||||| ||||||||||| ||| Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 391244 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||| ||||| || |||| || ||||| | ||||| || Sbjct 391245 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTGTCTGACTACAAC 391304 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || |||||||||||||| || Sbjct 391305 ATTCAGAAGGAATCCACTCTCCA 391327 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || |||||||| || ||||||||| | || || ||| | Sbjct 390128 AATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTC 390187 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | || || ||||||||||||||||| || ||||| |||||||| Sbjct 390188 GGATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCA 390247 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || |||||||| ||||| |||||||| | || || || |||| || || Sbjct 390248 ACAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAA 390307 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || || ||||| || || | ||||| ||||| Sbjct 390308 CATTCAGAAAGAATCTACACTCCATCTTGTGCTGAGACTTCGTGGTGG 390355 Score = 120 bits (132), Expect = 3e-22 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || ||||| || || || ||||| | Sbjct 387058 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTTGAAGCTTCA 387117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || |||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 387118 GATACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCTCCAGACCAA 387177 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| |||||||| || ||| | || || | | || || ||||||| ||| Sbjct 387178 CAGAGATTAATCTTTGCTGGCAAACAATTGGAAGACGGAAGAACGCTGTCAGACTACAAT 387237 Query 27586 GTCCA-AAAGG 27595 | || ||||| Sbjct 387238 ATACAGAAAGG 387248 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| || || || || ||| | || || ||| | Sbjct 390357 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCA 390416 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || |||||||||||||| || ||||| |||||||| Sbjct 390417 GACACGATCGAAAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390476 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| ||||| || ||||||| | || || ||||||| ||| Sbjct 390477 CAGAGATTGATCTTTGCTGGCAAGCAGCTAGAGGATGGAAGGACTCTGTCAGACTACAAT 390536 Query 27586 GTCCA-AAAGG 27595 | || ||||| Sbjct 390537 ATTCAGAAAGG 390547 >seq2315 Length=138946 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| ||||| | || || || | Sbjct 32993 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCA 33052 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || || ||||| || ||||||||||| |||||||||||| Sbjct 33053 GATACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAG 33112 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| || || |||||||||| ||| || || |||| || ||| Sbjct 33113 CAGAGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAGATTACAAT 33172 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||||| ||| | || | ||||| || ||||| Sbjct 33173 ATTCAGAAAGAGTCTACTCTGCATTTGGTTCTCCGTCTGCGAGGTGG 33219 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || || || || || || ||||| || || | Sbjct 28961 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 29020 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 29021 GATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAG 29080 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||||||||| || || || | || |||| || || || | ||||| ||| Sbjct 29081 CAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGATGGCCGCACACTGTCGGACTACAAT 29140 Query 27586 GTCCAAAAGG 27595 | ||||||| Sbjct 29141 ATTCAAAAGG 29150 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || || || ||||| || | || || || || Sbjct 27130 AATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATC 27189 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || || || || || |||||||| || |||||||| || || Sbjct 27190 TGATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCA 27249 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||||||||| || ||||||| || || || | || || || Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAA 27309 Query 27585 TGTCCAAAA 27593 | ||||| Sbjct 27310 CATACAAAA 27318 >seq242 Length=1788442 Score = 116 bits (128), Expect = 4e-21 Identities = 143/194 (74%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 |||||||| || || || || || | || || || || ||||| || |||||||| | Sbjct 1569774 ATAATGCAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCC 1569833 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| |||| |||| |||| || ||||| || |||||||| || || ||||| || Sbjct 1569834 TCTGATACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGAT 1569893 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||| | | ||||||||||| ||||| || ||||||| || || || | || ||| Sbjct 1569894 CAACAGAGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTAT 1569953 Query 27583 AATGTCCA-AAAGG 27595 ||| | || ||||| Sbjct 1569954 AATATTCAGAAAGG 1569967 >seq1551 Length=444118 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || ||||| || || ||| | || |||||| | Sbjct 25339 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 25280 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || ||||| ||||| |||| ||| || |||||||| ||| Sbjct 25279 GACACAATCGAAAATGTAAAAGCCAAAATCCAGGATAAGGCGGGCATACCTCCAGATCAG 25220 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||||||| || ||||||||||| ||||| Sbjct 25219 CAGCGTCTTATCTTTGCTGGTAAACAACT 25191 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||| |||||| || |||||||||||||| ||| | | || ||||| || ||| Sbjct 25483 AAAATTCAGAGCAAGGAAGGCATTCCTCCAGACCAACAGAGATTGATCTTTGCCGGCAAG 25424 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| | || | ||||||| ||| | || || |||||||| |||||| Sbjct 25423 CAGCTTGAGGATGGAAGAACATTGTCAGACTACAATATTCAGAAAGAATCCACACTTCAT 25364 Query 27610 CTAGTCTTGCG 27620 || || || || Sbjct 25363 CTGGTTTTCCG 25353 >seq779 Length=683570 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| ||||||||||| ||||| || ||||| || ||||| || || |||| || Sbjct 345901 GGTATTCCCCCAGACCAGCAACGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGC 345960 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || | ||||||| ||| |||| || || || ||||||||||| || Sbjct 345961 ACTTTGTCAGACTACAATATCCAGAAAGAGTCGACTCTTCATCTGGT 346007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570133660807040