Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028248.1 Length=136896 Score E Sequences producing significant alignments: (Bits) Value seq2134 87.8 2e-12 >seq2134 Length=118285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 180/266 (68%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 30609 ACGACCAAAAATCTCGTCCATCAAAACTTTTAAATACGCCATTTCGCAATCATC--TAAG 30666 ||| ||||||||||| |||||||| | ||||| ||| || ||| ||||| || Sbjct 8155 ACGCCCAAAAATCTCATCCATCAACATTTTTAGATATGCTTGTTCATTGTCATCAATACT 8096 Query 30667 TGAACGAATATTACCCCATCATCACTTAGAAGATTACGAATTATTTCTAACCTATCCCTC 30726 | | |||| || |||||||| || |||||| || | ||||| || ||||| | | Sbjct 8095 TATCCAAATACTA--CCATCATCTGCTAAAAGATTTCGTAAAATTTCCAATCTATCACGC 8038 Query 30727 ATTAAGCCCAGCCAAATGGAATGCTCCAGGCTATCATCGTAATGCTCAAAAGCCCTCCCG 30786 ||||| ||||||||| || || | || ||||| || ||| || || Sbjct 8037 ATTAAAGAAAGCCAAATGCTGTGTTCATATCCGTCGTCGTATTGAGGAAACGCAGAGCCA 7978 Query 30787 GTATTGAATGGTGGGTCTATGTAAACACACTTCACTTTGCCTGCATACTCTTGCTCTAGC 30846 ||||| | || ||||| ||||| | ||| ||||||| ||| ||| |||| | || || Sbjct 7977 GTATTATACGGCGGGTCGATGTAGATACATTTCACTTGGCCGGCAAACTCGTCTTCGAGG 7918 Query 30847 GCCTTCAATGCTAATAAGTTATCTCC 30872 | || | || | || |||||| || Sbjct 7917 GATTTTAGGGCAAGTAGGTTATCGCC 7892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437803482641920