Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq783 127 1e-24 seq2315 118 7e-22 >seq783 Length=580412 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || | | |||||| ||||||||| ||||| |||||||| || || || Sbjct 391352 GCCACCCCTGAGTCTAAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGA 391293 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || ||||| | ||||||||||||||||| ||||| || | |||||| || || || || Sbjct 391292 CAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGG 391233 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| || ||| ||| | ||| || | ||||||||| ||| | Sbjct 391232 AATGCCCTCCTTATC-CTGAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAA 391174 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || || || || || ||||||||||| Sbjct 391173 CTTCCAAAGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||||||| | ||| || || || ||||||||||| || || || Sbjct 390127 CCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAC 390068 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | |||||||| || || |||||||| || || | ||||||||| || || Sbjct 390067 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390008 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||| || ||||| ||| | | ||||||||| | ||| ||| Sbjct 390007 ATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACT 389948 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || ||||||||||||||||| Sbjct 389947 TCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || ||| | |||||| || || || |||||||| ||||||||| Sbjct 390355 CCACCACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAA 390296 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| |||| || || || || || ||||| || || | ||||||||| || || Sbjct 390295 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390236 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | ||| || | || || || ||| || Sbjct 390235 ATGCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGAC 390177 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| | ||||| |||||||||||||| Sbjct 390176 TTCCAAAGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/201 (73%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || || || || ||||| || |||| ||||||| | |||||| || ||||| Sbjct 387248 CCTTTCTGTATATTGTAGTCTGACAGCGTTCTTCCGTCTTCCAATTGTTTGCCAGCAAAG 387189 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| | ||||||||| || || | |||||| |||||| ||||| | || ||| | Sbjct 387188 ATTAATCTCTGTTGGTCTGGAGGAATTCCCTCTTTGTCTTGAATCTTA-GCCTTCACGTT 387130 Query 34636 AA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 ||| || ||| ||| || ||||| | ||| || ||||| || || | || |||| Sbjct 387129 CTCAATGGTATCTGAAGCT-TCAACTTCTAGGGTGATAGTTTTCCCTGTCAGGGTCTTCA 387071 Query 34694 CAAAAATCTGCATGTTGATTG 34714 | ||||||||||| || ||| Sbjct 387070 CGAAAATCTGCATCCTGTTTG 387050 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| ||||| || || ||||| || || | | || || || || || || ||||| Sbjct 390547 CCTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAG 390488 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||||||||| || || | || |||||||| ||||| | ||||||| | Sbjct 390487 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTG-GCTTTAACGTT 390429 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || |||||| ||| ||||||| || || |||||||| || | |||||||| Sbjct 390428 TTCGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCAC 390369 Query 34695 AAAAATCTGCAT 34706 ||||||||||| Sbjct 390368 GAAAATCTGCAT 390357 >seq2315 Length=138946 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||||| ||||| ||| || ||||| || ||||||||| Sbjct 33219 CCACCTCGCAGACGGAGAACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAA 33160 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || || ||||| || ||||| || | | ||| ||||| || || Sbjct 33159 AGTGTGCGACCATCCTCGAGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGG 33100 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||| ||| |||||| ||||| ||| || ||| |||||| Sbjct 33099 ATTCCCTCCTTATCTTGAATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCACT 33040 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || |||||||| ||||||||| Sbjct 33039 TCCAATGTAATTGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATG 32992 Score = 113 bits (124), Expect = 3e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 |||||||||||||| ||||||||||| || | ||||| || ||||| || || || || Sbjct 26965 TTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAATC 26906 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AA 34637 || | ||| || || || || | ||||| |||||| ||| ||||| ||| || | Sbjct 26905 AATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCT-TGAATTTTTGCTTTTACATTCTC 26847 Query 34638 AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 ||| || || ||||| || | |||||| |||||||| || | ||||||||||| Sbjct 26846 AATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAAA 26787 Query 34698 AATCTGCAT 34706 ||||||||| Sbjct 26786 AATCTGCAT 26778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314634503664536