Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq95 150 7e-32 seq7013 100 1e-16 >seq95 Length=1800565 Score = 150 bits (166), Expect = 7e-32 Identities = 158/198 (80%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 20746 GTGCTCAAAACACCTTAGCAAGTAGCGGTTACCGCGCCCGACAGACATGCGGtttttttG 20805 ||||||||||||| | | | ||||||| ||||| ||||| || ||||||| ||||| Sbjct 66510 GTGCTCAAAACACTT---CTAATAGCGGTAACCGC-CCCGAAAGT-ATGCGGTATTTTTT 66456 Query 20806 TGTCCAGTCTTCTTGGTTTATGACCGGGCGTGCGGCTAATACAATACC-AGCAAT-GGGA 20863 ||| || | || | |||| |||| ||| ||||||||||||||| |||||| |||| Sbjct 66455 TGTT--GT-TAATTTTTATATGTTCGGGTGTGAGGCTAATACAATACCTAGCAATAGGGA 66399 Query 20864 ATATGCCCGCCGACTACTTGCGGTTTTGAGCGCCCGGTCACCCTCTC-AAAAGGGGTAAA 20922 |||||||||||| ||| | |||||||||||| |||| ||||||||| ||||||| ||| Sbjct 66398 ATATGCCCGCCGTCTATTAGCGGTTTTGAGCACCCGTCCACCCTCTCAAAAAGGGTTAAT 66339 Query 20923 TCAAAATATCAAGTAGGA 20940 |||||||| | | ||||| Sbjct 66338 TCAAAATAGCTAATAGGA 66321 >seq7013 Length=21900 Score = 100 bits (110), Expect = 1e-16 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 18414 AATGAGCGTTCTGCTTTGTGTTTGCTGGCACTCCTGAACCTCACACCGGGAAAAGCATGG 18473 ||||| ||| ||||| | ||| |||| | || | | ||||| | ||||| |||| Sbjct 14576 AATGAACGTACTGCTCTTTGTCTGCTCTGTTTACTTGATATGACACCTGAAAAAGAATGG 14635 Query 18474 GCCGACGCGGAAAATCCGCTTGTGGGCATTACACCAATCATGAATTGGGTTCGGGAGCAC 18533 | | || || || || || || |||||||| |||||||| ||| || |||||| Sbjct 14636 ACTCAGGCAAGTAACCCACTAGTAGGTATTACACCTATCATGAACTGGTCACGTGAGCAC 14695 Query 18534 TACGGCAAGGTCTACGCACCCAATACTCGTGAGACATTCCGCCGCCAGTCTATGCATCAG 18593 || | | || ||||| || || || || ||||||||||| ||||||||||| || Sbjct 14696 TATCAAAGAGAATATGCACCTAACACACGAGAAACATTCCGCCGACAGTCTATGCACCAA 14755 Query 18594 TTCTGCGCTGCTGGAGTAGCCCTCTACAATCCGGACAAGCCCGATCGCCCAGTGAACAGC 18653 ||| | || ||| | ||||| || || || || || ||| | || || || || Sbjct 14756 TTCATTGAGGCGGGAATTTGTCTCTATAACCCTGATAAACCTGATAGGCCTGTTAATAGT 14815 Query 18654 CCGAAGGCTGTTTATCAGATCGA 18676 || || ||||| ||||| || || Sbjct 14816 CCTAAAGCTGTATATCAAATTGA 14838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195132934970288