Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_028671.1
Length=41307
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 158 3e-34
seq1690 98.7 3e-16
seq1615 86.0 2e-12
>seq1094
Length=2708314
Score = 158 bits (174), Expect = 3e-34
Identities = 400/596 (67%), Gaps = 27/596 (5%)
Strand=Plus/Plus
Query 36390 GGTCTAACTTTGGTTTTACTTGCTATCTTTTCAGAA---CGTTTGTCATATGCTTTATCA 36446
||||||||||| || | | | | || ||| ||| ||||| ||||| ||| |||
Sbjct 2374713 GGTCTAACTTTTGTATGATTAGAAAT---TTCCGAATCTCGTTTATCATAAGCTAAATCG 2374769
Query 36447 ATATATTTTTCAGGATTATTTTTGAAATTTTCCCAAGAAACAAGAACACAGTATCGTTCA 36506
|||||| ||||||| | | |||| | |||| ||| || ||||| |||| ||
Sbjct 2374770 ATATATGTTTCAGGGTCTTCGGCAAAATCTGCCCATTTAACTAGTACACAATATCTATCT 2374829
Query 36507 TCTTCAGACCAACCACATCCTGAAGTTTTAGGTATATAGTAGTTGTAACTAAACTCTTTA 36566
||||| |||||| | ||| || | ||||||||||| ||||| |||||||| |||||
Sbjct 2374830 TCTTCTGACCAAGCGCATT-TGT--TATTAGGTATATAATAGTTATAACTAAATTCTTTT 2374886
Query 36567 ACAACTGTTGAATCATCAATAACTACAGTGTTTATTTCATGACCTTTTCCGCATGAACAA 36626
| ||||| ||||| ||| || | || ||| ||| | ||||||| ||
Sbjct 2374887 ATGACTGTATTATCATTTATA--TAAACTGC--ATT--ATGTGTTCCGCCGCATGTCGAA 2374940
Query 36627 GTATGTT-TA---CCTTGATAGATTTTGTCTTGCATAGATGGCAGAACTACACCGAGAAT 36682
|| || || || ||| |||| | | |||| ||| | ||||| || | |||
Sbjct 2374941 C-ATCTTATAACCCCACCATATATTTGATTATACATATCTGGTAATACTACGCCTAAAAT 2374999
Query 36683 TCCATTTTTTGGATTATCTTTACTAGTATAAAGAGACGCTTGTAATTCTCGTTTGATATA 36742
||||||||| | |||| ||| | ||| | || || || ||||||| ||| ||| |
Sbjct 2375000 TCCATTTTTCGTATTACCTTCTCCGTGATATAATGATGCCTGCAATTCTCTTTTTATAAA 2375059
Query 36743 ATTTTGA--ATTTCAAAAGGATCATTTTCTGAACTATGAGATCCAATCAAATGAATTGTC 36800
||||| ||| || | |||||| | ||| | |||||| || |||||
Sbjct 2375060 TTTTTGCTCATTCCATCCTAA--ATTTTCAGCGCTAAATGCTCCAATTAAGAAGATTGTA 2375117
Query 36801 ACTGTTGAGTCAGAAAGATAATCTTCTCTTATTTTCCTCATGATATAATCTTCGTCATCA 36860
|| || || || || | ||||||||||||||| |||||||| ||||||||||||| || |
Sbjct 2375118 ACAGTAGAATCCGATAAATAATCTTCTCTTATCTTCCTCATTATATAATCTTCGTTATTA 2375177
Query 36861 GAATTTATCGGAATATTTAGAGATTTATCAACCATATCAATATTTAAATCTTCTTGGATT 36920
|||| || | || || | |||||| ||| ||||||| | |||| |||
Sbjct 2375178 GAATCAATTGCTTCATCAAGGCACATATCAATCATGTCAATAT---CAGAGGCTTGAATT 2375234
Query 36921 ATCCTTTTAAATTCAGCATCTTCTGTTTTAAAAGAAATAAAGCATTTATGCCCCAT 36976
|||| || | ||||||||| ||||| || | | | ||||| || |||||
Sbjct 2375235 GAATATTTATATCTAATATCTTCTGTCTTAAATGATACATAACATTTGTGTCCCAT 2375290
>seq1690
Length=1574822
Score = 98.7 bits (108), Expect = 3e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 37521 GGACCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37580
||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 661389 GGACCATTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTTGGTTCGAG 661330
Query 37581 TCCTGTATGGTCCA 37594
|||| ||||||||
Sbjct 661329 TCCTAGATGGTCCA 661316
>seq1615
Length=177996
Score = 86.0 bits (94), Expect = 2e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 37521 GGACCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37580
|| || ||||||||| |||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 4924 GGGCCTTTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTGGGTTCGAG 4865
Query 37581 TCCTGTATGGTCCATAACGAAAAATAAGATAA 37612
||| | || ||| |||| | |||||| ||
Sbjct 4864 TCCCCGAAGGCCCACCACGATATATAAGAAAA 4833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132021920640176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |