Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028671.1 Length=41307 Score E Sequences producing significant alignments: (Bits) Value seq1094 158 3e-34 seq1690 98.7 3e-16 seq1615 86.0 2e-12 >seq1094 Length=2708314 Score = 158 bits (174), Expect = 3e-34 Identities = 400/596 (67%), Gaps = 27/596 (5%) Strand=Plus/Plus Query 36390 GGTCTAACTTTGGTTTTACTTGCTATCTTTTCAGAA---CGTTTGTCATATGCTTTATCA 36446 ||||||||||| || | | | | || ||| ||| ||||| ||||| ||| ||| Sbjct 2374713 GGTCTAACTTTTGTATGATTAGAAAT---TTCCGAATCTCGTTTATCATAAGCTAAATCG 2374769 Query 36447 ATATATTTTTCAGGATTATTTTTGAAATTTTCCCAAGAAACAAGAACACAGTATCGTTCA 36506 |||||| ||||||| | | |||| | |||| ||| || ||||| |||| || Sbjct 2374770 ATATATGTTTCAGGGTCTTCGGCAAAATCTGCCCATTTAACTAGTACACAATATCTATCT 2374829 Query 36507 TCTTCAGACCAACCACATCCTGAAGTTTTAGGTATATAGTAGTTGTAACTAAACTCTTTA 36566 ||||| |||||| | ||| || | ||||||||||| ||||| |||||||| ||||| Sbjct 2374830 TCTTCTGACCAAGCGCATT-TGT--TATTAGGTATATAATAGTTATAACTAAATTCTTTT 2374886 Query 36567 ACAACTGTTGAATCATCAATAACTACAGTGTTTATTTCATGACCTTTTCCGCATGAACAA 36626 | ||||| ||||| ||| || | || ||| ||| | ||||||| || Sbjct 2374887 ATGACTGTATTATCATTTATA--TAAACTGC--ATT--ATGTGTTCCGCCGCATGTCGAA 2374940 Query 36627 GTATGTT-TA---CCTTGATAGATTTTGTCTTGCATAGATGGCAGAACTACACCGAGAAT 36682 || || || || ||| |||| | | |||| ||| | ||||| || | ||| Sbjct 2374941 C-ATCTTATAACCCCACCATATATTTGATTATACATATCTGGTAATACTACGCCTAAAAT 2374999 Query 36683 TCCATTTTTTGGATTATCTTTACTAGTATAAAGAGACGCTTGTAATTCTCGTTTGATATA 36742 ||||||||| | |||| ||| | ||| | || || || ||||||| ||| ||| | Sbjct 2375000 TCCATTTTTCGTATTACCTTCTCCGTGATATAATGATGCCTGCAATTCTCTTTTTATAAA 2375059 Query 36743 ATTTTGA--ATTTCAAAAGGATCATTTTCTGAACTATGAGATCCAATCAAATGAATTGTC 36800 ||||| ||| || | |||||| | ||| | |||||| || ||||| Sbjct 2375060 TTTTTGCTCATTCCATCCTAA--ATTTTCAGCGCTAAATGCTCCAATTAAGAAGATTGTA 2375117 Query 36801 ACTGTTGAGTCAGAAAGATAATCTTCTCTTATTTTCCTCATGATATAATCTTCGTCATCA 36860 || || || || || | ||||||||||||||| |||||||| ||||||||||||| || | Sbjct 2375118 ACAGTAGAATCCGATAAATAATCTTCTCTTATCTTCCTCATTATATAATCTTCGTTATTA 2375177 Query 36861 GAATTTATCGGAATATTTAGAGATTTATCAACCATATCAATATTTAAATCTTCTTGGATT 36920 |||| || | || || | |||||| ||| ||||||| | |||| ||| Sbjct 2375178 GAATCAATTGCTTCATCAAGGCACATATCAATCATGTCAATAT---CAGAGGCTTGAATT 2375234 Query 36921 ATCCTTTTAAATTCAGCATCTTCTGTTTTAAAAGAAATAAAGCATTTATGCCCCAT 36976 |||| || | ||||||||| ||||| || | | | ||||| || ||||| Sbjct 2375235 GAATATTTATATCTAATATCTTCTGTCTTAAATGATACATAACATTTGTGTCCCAT 2375290 >seq1690 Length=1574822 Score = 98.7 bits (108), Expect = 3e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 37521 GGACCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37580 ||||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||| Sbjct 661389 GGACCATTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTTGGTTCGAG 661330 Query 37581 TCCTGTATGGTCCA 37594 |||| |||||||| Sbjct 661329 TCCTAGATGGTCCA 661316 >seq1615 Length=177996 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 37521 GGACCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37580 || || ||||||||| |||||||||||| ||||||||||||| |||||| |||||||| Sbjct 4924 GGGCCTTTAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTCGGTCCTGGGTTCGAG 4865 Query 37581 TCCTGTATGGTCCATAACGAAAAATAAGATAA 37612 ||| | || ||| |||| | |||||| || Sbjct 4864 TCCCCGAAGGCCCACCACGATATATAAGAAAA 4833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132021920640176