Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028700.1 Length=37976 Score E Sequences producing significant alignments: (Bits) Value seq3213 113 1e-20 >seq3213 Length=2170589 Score = 113 bits (124), Expect = 1e-20 Identities = 245/356 (69%), Gaps = 23/356 (6%) Strand=Plus/Plus Query 11894 AAAAATTTTAGATGCTTGTTGTGGAAGTCGCCTATTTTGGTTTGATAAAAACGAACCTCA 11953 || ||| ||||||||||||||||||||||| | ||| ||||||||| | || | Sbjct 780885 AACAATCTTAGATGCTTGTTGTGGAAGTCGTATGTTTCATTTTGATAAACAT-AATAGGA 780943 Query 11954 CACAACT-TTTATGGA----CGTCAG--ACAAGAAAAATTTGAGATGC-ACGGCaaaaaa 12005 | || |||||||| || | | ||||||| | |||| | |||| || | Sbjct 780944 AAGTTCTATTTATGGATAATCGAAAATTAGAAGAAAACCT----ATGCGATGGCAGAATA 780999 Query 12006 aTCAATGTCAACCCTGATGTAATTGGTGATTTTCGTGATATGCCTTTTGAAAGTAATAGC 12065 | || || || ||||| | | | || ||||| |||||||||||| | | | ||| Sbjct 781000 TTAAAAGTAAATCCTGACATTGTGGCCGACTTTCGCCATATGCCTTTTGCTAATGACAGC 781059 Query 12066 TTTAACCTGGTTGTCTTCGACCCGCCACACTTAAAATATGTTGGACAAAACTCAATT--A 12123 ||||| ||||| |||||||||| || || || | | | ||||| | |||| | || | Sbjct 781060 TTTAATATGGTTATCTTCGACCCACCTCATTTGACAAAAGTTGG-CGAAACA-AGTTGGA 781117 Query 12124 TG---AAAGCTCAGTATGGCCAACTTGATAAAGAAAACTGGAAAGAAGATATTTCAAAAG 12180 || ||| | || ||| || | | ||||| | ||| || | ||||| | ||| Sbjct 781118 TGTGTAAAA---AATACGGCAAATTAAACAAAGACACTTGGCAATATGATATAAAACAAG 781174 Query 12181 GTTTCGAAGAGTGTATGAGAGTTCTAAAAGTAGGAGGAACTTTAGTTTTTAAATGG 12236 | || || ||||||||||||||||| ||||| || || || || |||||||| ||| Sbjct 781175 GATTTGATGAGTGTATGAGAGTTCTCAAAGTTGGTGGTACATTGGTTTTTAAGTGG 781230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121365858761952