Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq2029 123 3e-23 seq1210 111 2e-19 seq1535 95.1 1e-14 seq3436 91.5 2e-13 seq179 82.4 8e-11 >seq2029 Length=231691 Score = 123 bits (136), Expect = 3e-23 Identities = 210/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 129147 AGTAGAATTTTTGAATCCAACAGCCATAGGTAATCCTGAAGCAATTTCACGATGGGTCTG 129206 |||| |||||| || || || || | ||| || ||||| ||||||||||||||||| Sbjct 21202 AGTACCATTTTTAAAGCCTACTGCTGAGGATAAACCAGAAGCCATTTCACGATGGGTCTG 21261 Query 129207 TGATTCTGTAGTACGAGCACCAATAGCGACCCAACTAAAAATACCTGATAGATACTTAAT 129266 |||||| |||||||| || ||||| || ||| |||| | || || ||| | | Sbjct 21262 TGATTCAGTAGTACGCGCGCCAATGGCTGACCAGCTAATTAGGTCTTGTAAATATTG--T 21319 Query 129267 AGT-AAATGGGTCCAAGACCT-CTGTCGCCAAAGGAAGTCCAAGATTCAATAGTTCTAAA 129324 || |||| || |||| || | || || || | || | || || ||||| Sbjct 21320 GGTGAAATAGGATCAAGTGCTTCAGTAGCAGTTGGTAAGCCCATATCAGCTAAATCTAAT 21379 Query 129325 CAGAGATGGCGGGCAATTCTTAACCCTTCATCAATATTAAAAGAACCATTTAATTCTGGG 129384 | || || ||||| |||| || || ||||| ||||| || ||| ||| | || Sbjct 21380 AGTAATTGACGACCAATTTTTAAACCATCTTCAATCTTAAATGAGTCATCTAAATAAGGA 21439 Query 129385 TCGTTGACTAGGCCTTTCCAACCTACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATA 129444 || |||| || |||||||| ||||| || || ||||||||||||||||| || |||||| Sbjct 21440 TCATTGATTAAACCTTTCCAGCCTACGGTGGTACGTGGTTTTTCAAAATATACGCGCATA 21499 Query 129445 A 129445 | Sbjct 21500 A 21500 >seq1210 Length=1188399 Score = 111 bits (122), Expect = 2e-19 Identities = 126/168 (75%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 55546 TGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAA---ATCTGACGGC 55602 ||||||| ||||| ||| || ||||||| |||| | |||| | | || || Sbjct 698651 TGTTCTGGAGATAACGTCTAATTGCTGTTCTTTTGTCA---ATTTAACGAAGTTTACAGC 698707 Query 55603 ATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCTAA 55662 ||| || ||||| |||||||| | ||| |||||| ||||| ||||| | ||||| | Sbjct 698708 ATATCCTGAAACACGAATTGTAAGTTGAGGATATAACTCAGGGTGTTCCATTGCATCAAT 698767 Query 55663 CAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTC 55710 ||||| ||||||| || ||||||||||||| ||||||||||||||| Sbjct 698768 CAACAAGTCTTTATCAAATACATTGACATTCAAATGTTGTCCACCTTC 698815 >seq1535 Length=1988416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 55598 ACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCA 55657 || ||||| || || || ||||| || | ||| ||||||||||| |||||||| ||||| Sbjct 223654 ACTGCATAACCGGATACCCGAATCGTAAGTTGAGGATATTTTTCCGGATGTTCCATAGCA 223595 Query 55658 TCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTT 55709 ||| |||||| || || || ||||| ||||||||||| ||| |||||| Sbjct 223594 TCTTCCAACATCTCACGGTTGAGTACATTCACATTCAGATGATGTGCACCTT 223543 >seq3436 Length=2346199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55598 ACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCA 55657 || ||||| || ||||| || ||||||| ||| ||||||||||| |||||||| ||||| Sbjct 1583736 ACCGCATAACCGGAAACACGTATTGTTAGTTGCGGATATTTTTCGGGATGTTCCATAGCA 1583795 Query 55658 TCTAACAACATTTCTTTATTAAGAACATTGACATT 55692 ||| || |||||| | ||||| ||||| ||||| Sbjct 1583796 TCTTCCAGCATTTCCCTGTTAAGCACATTTACATT 1583830 >seq179 Length=2312354 Score = 82.4 bits (90), Expect = 8e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 64872 CAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCCAACTGAGCTA 64929 ||||||||||||||| |||||| ||||||||||| | |||||||||||| |||||||| Sbjct 786897 CAGGATTCGAACCTGAGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 786954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518076198415680