Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028768.1 Length=49714 Score E Sequences producing significant alignments: (Bits) Value seq1094 102 3e-17 seq875 102 3e-17 seq3436 100 9e-17 seq2340 95.1 4e-15 seq2146 95.1 4e-15 seq2694 93.3 1e-14 seq5589 89.7 2e-13 seq2787 89.7 2e-13 seq1702 89.7 2e-13 seq179 87.8 6e-13 seq126 87.8 6e-13 >seq1094 Length=2708314 Score = 102 bits (112), Expect = 3e-17 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| |||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 981877 GTCGGGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 981936 Query 36142 ACTGCGCTACACTCCGAA 36159 |||||||||||| ||||| Sbjct 981937 ACTGCGCTACACCCCGAA 981954 Score = 98.7 bits (108), Expect = 3e-16 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| |||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 981983 GTCGGGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 982042 Query 36142 ACTGCGCTACACTCCG 36157 |||||||||||| ||| Sbjct 982043 ACTGCGCTACACCCCG 982058 >seq875 Length=1099013 Score = 102 bits (112), Expect = 3e-17 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| |||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 1090760 GTCGGGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 1090819 Query 36142 ACTGCGCTACACTCCGAA 36159 |||||||||||| ||||| Sbjct 1090820 ACTGCGCTACACCCCGAA 1090837 >seq3436 Length=2346199 Score = 100 bits (110), Expect = 9e-17 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| |||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 2131320 GTCGGGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 2131379 Query 36142 ACTGCGCTACACTCCGA 36158 |||||||||||| |||| Sbjct 2131380 ACTGCGCTACACCCCGA 2131396 >seq2340 Length=108680 Score = 95.1 bits (104), Expect = 4e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 4776 GGCGACTGGGATATCGTGTCCGGCGGCGCCTTCGACGACGTTTGGGACCGTCAAACCCAT 4835 |||||||||||||||||| | |||||||| ||||||||| | ||| | || | || ||| Sbjct 16253 GGCGACTGGGATATCGTGGCAGGCGGCGCGTTCGACGACATCTGGAAGCGCGACACGCAT 16194 Query 4836 GTTAAACCTCGCTCTAAGATTCCTTCCAGTTGGCCTGTATATCGTGTGCTTGATTGGGGT 4895 ||| || |||| | |||| ||||| || |||| | | || | | || ||||| Sbjct 16193 GTTTTGCCGCGCTTTCAGATACCTTCAAGCTGGCGCATCGACCGATCGTTCGACTGGGGC 16134 Query 4896 ACTAGCGCTCCTTTCTCGGTGGGATGGTGGGC 4927 | ||| || ||||||||||| |||||||| Sbjct 16133 AGCAGCAAACCGTTCTCGGTGGGCTGGTGGGC 16102 >seq2146 Length=1104199 Score = 95.1 bits (104), Expect = 4e-15 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTA-CCTG 36141 ||||| |||| ||||||||||||| |||||| ||||||||||||||| ||||||| || | Sbjct 823383 GTCGGGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAGCCGG 823442 Query 36142 ACTGCGCTACACTCCGA 36158 ||||||||||| |||| Sbjct 823443 GCTGCGCTACACCCCGA 823459 >seq2694 Length=83261 Score = 93.3 bits (102), Expect = 1e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 36079 TCTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-A 36137 ||| |||| |||| ||||||||||||| |||||| ||||||||||||||| |||||| | Sbjct 48480 TCTTGTCGAGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAA 48421 Query 36138 CCTGACTGCGCTACAC 36153 || ||||||||||||| Sbjct 48420 CCGGACTGCGCTACAC 48405 >seq5589 Length=13581 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| ||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 7309 GTCGGGATACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 7368 Query 36142 ACTGCGCTACA 36152 ||||||||||| Sbjct 7369 ACTGCGCTACA 7379 >seq2787 Length=1710943 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| ||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 1180844 GTCGGGATACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 1180903 Query 36142 ACTGCGCTACA 36152 ||||||||||| Sbjct 1180904 ACTGCGCTACA 1180914 >seq1702 Length=707479 Score = 89.7 bits (98), Expect = 2e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| ||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| | Sbjct 411514 GTCGGGATACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 411573 Query 36142 ACTGCGCTACA 36152 ||||||||||| Sbjct 411574 ACTGCGCTACA 411584 >seq179 Length=2312354 Score = 87.8 bits (96), Expect = 6e-13 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 36083 GTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT-ACCTG 36141 ||||| || ||||||||||||| ||||| ||||||||||||||| |||||| ||| | Sbjct 479353 GTCGGGGTGGCAGGATTCGAACCTGCGACCCCCTGCTCCCAAAGCAGGTGCGCTAACCGG 479412 Query 36142 ACTGCGCTACACTCCGAA 36159 |||||||||||| ||||| Sbjct 479413 ACTGCGCTACACCCCGAA 479430 >seq126 Length=3533043 Score = 87.8 bits (96), Expect = 6e-13 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 36080 CTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTA-C 36138 || |||| |||| ||||||||||||| |||||| ||||||||||||||| ||||||| | Sbjct 242693 CTTGTCGAGGTACCAGGATTCGAACCTGGGACCCCCTGCTCCCAAAGCAGGTGCGCTAGC 242634 Query 36139 CTGACTGCGCTACAC 36153 | | ||||||||||| Sbjct 242633 CGGGCTGCGCTACAC 242619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158916400439104