Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq1535 98.7 1e-15 seq3436 87.8 2e-12 seq1690 86.0 7e-12 seq6689 82.4 9e-11 >seq1535 Length=1988416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 125487 AAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTAA 125546 |||| | || ||||| ||||| ||||| || || ||||| | | | ||||||| | Sbjct 223543 AAGGTGCACATCATCTGAATGTGAATGTACTCAACCGTGAGATGTTGGAAGATGCTATGG 223602 Query 125547 AACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGTTTT 125605 ||||||| ||||||||||||||||| || ||||| || || |||||||||||| |||| Sbjct 223603 AACATCCGGAAAAATATCCTCAACTTACGATTCGGGTATCCGGTTATGCAGTTAATTTT 223661 >seq3436 Length=2346199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 125487 AAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTAA 125546 |||| | ||| || | ||||| ||||| || || | |||| ||| ||||||| | Sbjct 1583847 AAGGAGCTCACCACTTAAATGTAAATGTGCTTAACAGGGAAATGCTGGAAGATGCTATGG 1583788 Query 125547 AACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTT 125599 ||||||| ||||||||||| ||||| || || |||||||| |||||||| ||| Sbjct 1583787 AACATCCCGAAAAATATCCGCAACTAACAATACGTGTTTCCGGTTATGCGGTT 1583735 >seq1690 Length=1574822 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 122094 TGCGGTAGTAACTCAGTTGGTAGAGTGCCGTCCTTCCAAGTCGGATGTCGCGAGTTCGAA 122153 ||||| ||| |||||| ||||||| | || | | ||||| || |||||||||||||||| Sbjct 480167 TGCGGGAGTGGCTCAGT-GGTAGAGCGTCGCCTTGCCAAGGCGAATGTCGCGAGTTCGAA 480225 Query 122154 TCTCGTCTGCCGCTCCAAA 122172 |||||||| |||||||||| Sbjct 480226 TCTCGTCTTCCGCTCCAAA 480244 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 122093 ATGCGGTAGTAACTCAGTTGGTAGAGTGCCGTCCTTCCAAGTCGGATGTCGCGAGTTCGA 122152 |||||| ||| |||||| ||||||| | || | | ||||| || ||||||||||||||| Sbjct 1364658 ATGCGGGAGTGGCTCAGT-GGTAGAGCGTCGCCTTGCCAAGGCGAATGTCGCGAGTTCGA 1364716 Query 122153 ATCTCGTCTGCCGCTCCAA 122171 ||||||||| ||||||||| Sbjct 1364717 ATCTCGTCTTCCGCTCCAA 1364735 >seq6689 Length=8825 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 122727 GGGCGTGTAGCTCAATTGGGAGAGCAACTGCTTTGCAAGCAGAAGGTTGAGGGTTCGAGT 122786 ||| ||||||||||||||||||||| | ||||||||||| ||| || | |||||||| | Sbjct 4097 GGGGGTGTAGCTCAATTGGGAGAGCGTCAGCTTTGCAAGCTGAATGTCGTGGGTTCGATT 4038 Query 122787 CCCTTCTTGTCCACCAAA 122804 |||| | ||||||||| Sbjct 4037 CCCTCCACCTCCACCAAA 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582555410113600