Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq2745 120 1e-22
seq1094 86.0 2e-12
>seq2745
Length=54617
Score = 120 bits (132), Expect = 1e-22
Identities = 170/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40234
||||||||||||| ||| |||||||| ||||| || || || ||||| || ||||| |
Sbjct 47074 AAGTCGATGTCAAAGTCCGGCATGGAAACGCGTTCCGGATTAAGGAAACGTTCGAACAGC 47015
Query 40235 AGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCG 40294
|| | || ||| |||| || |||||||| || |||| || | |||||||
Sbjct 47014 AGGTTGAACTGCAGCGGATTAAGATCGGTGATAAAAAGCGCCCAGGCAACGACCGAACCG 46955
Query 40295 GCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAG 40354
|| | || || || || |||||||| | || || || ||||| ||| |||
Sbjct 46954 GCACCTGATCCGCGTCCCGGACCGACAGGAATTCCTTTGGATTTCGCCCACTGGATAAAG 46895
Query 40355 TCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413
||||| |||| ||| ||||| ||| || |||||||||||||| | |||||| || ||
Sbjct 46894 TCGGCAACGATCAGAAAGTATCCCGGAAATCCCATCTGGATGATAACGTCGATTTCATA 46836
>seq1094
Length=2708314
Score = 86.0 bits (94), Expect = 2e-12
Identities = 118/162 (73%), Gaps = 5/162 (3%)
Strand=Plus/Plus
Query 40163 CGCCGGTCATCG---AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGG 40219
|||| ||||||| ||||| || || | ||||||||||| | || ||||| || |||
Sbjct 2100527 CGCCCGTCATCGTCGAAGTCAATATCTATATCGGGCATGGATATACGGTCGGGATTGAGG 2100586
Query 40220 AACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAG 40279
|| |||||||| | ||| | | || | |||||| | || ||||| || || || ||
Sbjct 2100587 AAACGCTCGAACAGGAGGTCATACTTAATTGGATCAATATCCGTGATACCCAGACAATAT 2100646
Query 40280 GCGACCAGC-GAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320
|| | |||| |||||||| || || || ||||| || || ||
Sbjct 2100647 GCTA-CAGCAGAACCGGCAGCAGATCCACGCCCCGGCCCCAC 2100687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160359175553808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |