Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq2745 120 1e-22 seq1094 86.0 2e-12 >seq2745 Length=54617 Score = 120 bits (132), Expect = 1e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40234 ||||||||||||| ||| |||||||| ||||| || || || ||||| || ||||| | Sbjct 47074 AAGTCGATGTCAAAGTCCGGCATGGAAACGCGTTCCGGATTAAGGAAACGTTCGAACAGC 47015 Query 40235 AGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCG 40294 || | || ||| |||| || |||||||| || |||| || | ||||||| Sbjct 47014 AGGTTGAACTGCAGCGGATTAAGATCGGTGATAAAAAGCGCCCAGGCAACGACCGAACCG 46955 Query 40295 GCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAG 40354 || | || || || || |||||||| | || || || ||||| ||| ||| Sbjct 46954 GCACCTGATCCGCGTCCCGGACCGACAGGAATTCCTTTGGATTTCGCCCACTGGATAAAG 46895 Query 40355 TCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413 ||||| |||| ||| ||||| ||| || |||||||||||||| | |||||| || || Sbjct 46894 TCGGCAACGATCAGAAAGTATCCCGGAAATCCCATCTGGATGATAACGTCGATTTCATA 46836 >seq1094 Length=2708314 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 5/162 (3%) Strand=Plus/Plus Query 40163 CGCCGGTCATCG---AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGG 40219 |||| ||||||| ||||| || || | ||||||||||| | || ||||| || ||| Sbjct 2100527 CGCCCGTCATCGTCGAAGTCAATATCTATATCGGGCATGGATATACGGTCGGGATTGAGG 2100586 Query 40220 AACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAG 40279 || |||||||| | ||| | | || | |||||| | || ||||| || || || || Sbjct 2100587 AAACGCTCGAACAGGAGGTCATACTTAATTGGATCAATATCCGTGATACCCAGACAATAT 2100646 Query 40280 GCGACCAGC-GAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320 || | |||| |||||||| || || || ||||| || || || Sbjct 2100647 GCTA-CAGCAGAACCGGCAGCAGATCCACGCCCCGGCCCCAC 2100687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160359175553808