Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq1690 95.1 3e-15 seq3637 93.3 1e-14 seq2641 86.0 2e-12 >seq1690 Length=1574822 Score = 95.1 bits (104), Expect = 3e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31251 TTTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTA 31310 ||||||| | | || |||||| |||||||||||||| ||||||||||||| |||||||| Sbjct 1327305 TTTTGGCAGGGGTGGCAGGATTTGAACCTACGAATGCTGGAATCAAAATCCAGTGCCTTA 1327246 Query 31311 CCGCTTGGCGAC 31322 |||||||||||| Sbjct 1327245 CCGCTTGGCGAC 1327234 >seq3637 Length=27561 Score = 93.3 bits (102), Expect = 1e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 31250 TTTTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTT 31309 || ||||||| | ||| ||||||||||| ||||||||||| | ||||| |||||||||| Sbjct 12734 TTATTGGCTGGGGCGGGTGGATTCGAACCAACGAATGCCGGTACCAAAAACCGGTGCCTT 12675 Query 31310 ACCGCTTGGCGACG 31323 |||||||||||||| Sbjct 12674 ACCGCTTGGCGACG 12661 >seq2641 Length=91397 Score = 86.0 bits (94), Expect = 2e-12 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 31236 TGGCAAAGTTACCGTT--TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAAT 31293 ||||||| ||| ||| ||||| ||| || | ||||||||||| ||| ||||| || | Sbjct 8866 TGGCAAA-TTATCGTGAATTTGGTTGCCCCTGCTGGATTCGAACCAACGCATGCCAGAGT 8808 Query 31294 CAAAATCCGGTGCCTTACCGCTTGGCGACGGCGCAA 31329 |||| || |||||||||||||||||||| || |||| Sbjct 8807 CAAAGTCTGGTGCCTTACCGCTTGGCGAAGGGGCAA 8772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138157713700048