Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq1659 113 1e-20 seq2745 80.6 9e-11 >seq1659 Length=254437 Score = 113 bits (124), Expect = 1e-20 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 38998 CCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATC 39057 ||| |||| |||||| || ||| | ||| ||||| ||||| || || ||||||| | Sbjct 98509 CCGAACGTAATGATCTGGGCAACCCGCTTACTCCCGTATTTCTCAGTAACATACCGGAGC 98568 Query 39058 ACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCA 39117 |||||| | || | || ||||| |||||||| | ||||| | |||| ||| || Sbjct 98569 ACGTCGGCGCGTCCGTCCTCGTCGAAATCGATGTCGATATCGGGAAGCGAGATACGGTCG 98628 Query 39118 GGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCG 39177 || || ||||| |||||||| | || ||| ||| ||||| | | || |||||| Sbjct 98629 GGATTGAGGAAACGCTCGAAAAGCAGGTCGTATTTGATCGGGTCGATATTAGTTATCCCG 98688 Query 39178 AGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCG 39237 |||||||| || | | ||| || || || || ||||| || || || || ||| || Sbjct 98689 AGGGCGTATGCCACGACCGACCCGGCGGCCGAACCGCGTCCCGGTCCCACAGCCACTCCC 98748 Query 39238 TTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATC 39297 ||||| | || | ||| || || || | |||||||| ||| |||||||| Sbjct 98749 ATCTCCCTACCCGCACGGATAAAATCCCACACTATCAGGAAGTAGCCCGGATACCCCATC 98808 >seq2745 Length=54617 Score = 80.6 bits (88), Expect = 9e-11 Identities = 161/239 (67%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 ||||||||||| | ||| |||||||| || || || || || ||||| || ||||| | Sbjct 47074 AAGTCGATGTCAAAGTCCGGCATGGAAACGCGTTCCGGATTAAGGAAACGTTCGAACAGC 47015 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 || | | | || | || |||||||| || || | || | | ||| || Sbjct 47014 AGGTTGAACTGCAGCGGATTAAGATCGGTGATAAAAAGCGCCCAGGCAACGACCGAACCG 46955 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || | || ||||| || || ||||| | || || |||||||| ||| ||| Sbjct 46954 GCACCTGATCCGCGTCCCGGACCGACAGGAATTCCTTTGGATTTCGCCCACTGGATAAAG 46895 Query 39262 TCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||||| |||| || ||||| ||| || ||||||||| |||| | |||||| || || Sbjct 46894 TCGGCAACGATCAGAAAGTATCCCGGAAATCCCATCTGGATGATAACGTCGATTTCATA 46836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159668179046544