Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq22414 95.1 1e-14 seq1535 87.8 2e-12 seq2629 84.2 2e-11 seq558 82.4 7e-11 >seq22414 Length=1126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/236 (70%), Gaps = 13/236 (6%) Strand=Plus/Plus Query 129296 AGCTAACATTACTGCAACAACAGTTGACGGTAAGAAAGTA--GCAACTTGTGTTGTAACA 129353 |||||| |||| | ||||| ||||| || ||| || ||| |||||||||| ||| Sbjct 36 AGCTAATATTAAAGTTACAACTGTTGATGGG--GAATTTACAGCATCTTGTGTTGTTACA 93 Query 129354 GTAACTGTGCCTGTAACAGGCGTTACACTAGATACGAATGCTATTACTTTAGAAATTGAC 129413 || | | ||||||| ||||| ||| ||||| ||| |||| ||||| ||| Sbjct 94 GTTAATTCAGCTGTAACTGGCGTAACAATAGATCCGACAGCTA---CTTTA---ATTACA 147 Query 129414 GGT--ACACAAA-AATTAGTAGCAACAGTTGCTCCTGCTAATGCAACAAACAAAAAAGTA 129470 ||| | | ||| ||||| |||| |||| | ||| || ||| | || ||| | ||| Sbjct 148 GGTGAAGATAAACAATTAACAGCAGCAGTAGATCCAAGTACTGCCCCGAATAAAGATGTA 207 Query 129471 ACATGGAAATCCGATAAACCGGAAATTGCTACTGTAGACCAAGAAGGTACAGTGAC 129526 |||||| || ||||||||||||||| || ||||| || | |||| |||||| Sbjct 208 ACATGGGAAAGCGATAAACCGGAAATCGCAACTGTTGATGCATTAGGTTTAGTGAC 263 >seq1535 Length=1988416 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 129296 AGCTAACATTACTGCAACAACAGTTGACGGTAAGAAAGTA--GCAACTTGTGTTGTAACA 129353 |||||| |||| || ||||| | || || |||| || ||||||||||| || || Sbjct 210872 AGCTAATATTAAAGCCACAACTGCTGGAGG--AGAATTTACAGCAACTTGTGTCGTTACG 210815 Query 129354 GTAACTGTGCCTGTAACAGGCGTTACACTAGATACGAATGCTATTACTTTAGAAATTGAC 129413 || | | ||||||| || || ||| ||||| ||| |||| ||||| | || Sbjct 210814 GTTAATTCAGCTGTAACTGGTGTAACAGTAGATCCGACAGCTA---CTTTAATTACTGGT 210758 Query 129414 GGTACACAAAAATTAGTAGCAACAGTTGCTCCTGCTAATGCAACAAACAAAAAAGTAACA 129473 | ||| || ||||| ||| ||| | |||| || ||| |||| | | | |||||| Sbjct 210757 GAAACAAAACAATTAACTGCAGTAGTAGATCCTAATACTGCTCCAAATACAGATGTAACA 210698 Query 129474 TGGAAATCCGATAAACCGGAAATTGCTACTGT 129505 ||| || ||||||||||| ||||||||||| Sbjct 210697 TGGGAAAGTGATAAACCGGAGATTGCTACTGT 210666 >seq2629 Length=63935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 49959 TACAGGATTCGAACCTGTGACCCCCTGATTAAGAGTCAGGTGCTACCACCAACTGAGCTA 50018 ||||||||||||||||||||||| ||||||||||||||| |||| | ||| ||||||||| Sbjct 26878 TACAGGATTCGAACCTGTGACCCACTGATTAAGAGTCAGTTGCT-CTACCGACTGAGCTA 26820 Query 50019 A 50019 | Sbjct 26819 A 26819 >seq558 Length=1588989 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 49955 CCCCTACAGGATTCGAACCTGTGACCCCCTGATTAAGAGTCAGGTGCTACCACCAACTGA 50014 ||||| |||| | |||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 559566 CCCCTCTAGGACTTGAACCTAGGACCCCCTGATTAACAGTCAGGTGCTCTAACCAACTGA 559625 Query 50015 GCTAAGGAGATAAAA 50029 ||||||||| |||| Sbjct 559626 GCTAAGGAGGAAAAA 559640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010478607680