Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq2787 87.8 2e-12 seq1885 87.8 2e-12 seq5385 84.2 2e-11 seq1094 84.2 2e-11 seq7088 82.4 8e-11 seq2884 82.4 8e-11 seq2342 82.4 8e-11 seq1659 82.4 8e-11 >seq2787 Length=1710943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 95741 ATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 95800 ||||||| ||||||||| ||||||||| | ||||||||||||| | ||||||||| ||| Sbjct 516232 ATGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGA 516173 Query 95801 AACCCGTTCTTCGCTC 95816 | ||||| ||||||| Sbjct 516172 ATCCCGTCTTTCGCTC 516157 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 95742 TGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGTA 95801 |||||| ||||||||| ||||||||| | ||||||||||||| | ||||||||| ||| | Sbjct 253217 TGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGAA 253158 Query 95802 ACCCGTTCTTCGCTC 95816 ||||| ||||||| Sbjct 253157 TCCCGTCTTTCGCTC 253143 >seq1885 Length=148911 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 95741 ATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 95800 ||||||| ||||||||| ||||||||| | ||||||||||||| | ||||||||| ||| Sbjct 88486 ATGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGA 88545 Query 95801 AACCCGTTCTTCGCTC 95816 | ||||| ||||||| Sbjct 88546 ATCCCGTCTTTCGCTC 88561 >seq5385 Length=39409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 95742 TGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGTA 95801 |||||| |||||||| ||||||||| | ||||||||||||| | ||||||||| ||| Sbjct 3215 TGCGAAAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGAG 3156 Query 95802 ACCCGTTCTTCGCTCT 95817 |||||| |||||||| Sbjct 3155 TCCCGTTTTTCGCTCT 3140 >seq1094 Length=2708314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 95743 GCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGTAA 95802 ||||| ||||||||| ||||||||| | ||||||||||||| | ||||||||| ||| | Sbjct 1617478 GCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGGGTTCGAAT 1617419 Query 95803 CCCGTTCTTCGCTC 95816 ||||| ||||||| Sbjct 1617418 CCCGTCTTTCGCTC 1617405 >seq7088 Length=425276 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 92304 GTAGCGGTGTAGAGCAGCTAGGTAGCTCGCCGGGCTCATAACCCGGAGGACGCGTGTTCG 92363 || |||| ||||||||||| ||||||||| ||||||||||||||||||| ||| ||||| Sbjct 185437 GTCGCGGGGTAGAGCAGCT-GGTAGCTCGTCGGGCTCATAACCCGGAGGTCGCAGGTTCG 185495 Query 92364 AATCACGCCACCGCCAC 92380 |||| | | |||| || Sbjct 185496 AATCCTGTCCCCGCAAC 185512 >seq2884 Length=40100 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 90722 ACGGGGTGTAGTTCAG-TGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90780 |||||| |||| ||| ||| || ||||||| ||||||| ||||||| ||||||||||| Sbjct 19825 ACGGGGCGTAGCGCAGGTGGTAGCGCGCTTGCTTTGGGAGCAAGATGCCGCAGGTTCGAG 19884 Query 90781 TCCTGTCACCCCGAC 90795 ||||||| ||||||| Sbjct 19885 TCCTGTCGCCCCGAC 19899 >seq2342 Length=1184292 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 113101 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113160 || |||||||||||||| |||| || ||| ||| ||||| |||| || |||| Sbjct 773164 GGACCGGGCCGTGGCTCGGCCGCAGGTTCGGCGGTTGCCTACTGTTTGGGTATTACCTTA 773105 Query 113161 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCG 113213 || |||||||| ||||||||| || |||| ||||| ||| | ||||| || || Sbjct 773104 ATTGACCCGATTAAGTACGACTTGCTGTTTGAGCGTTTTTTGAACCCAGATCG 773052 >seq1659 Length=254437 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 113092 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 113151 || ||||| || ||||| || || || |||| || ||| | || | |||| | | || Sbjct 98743 TGGCTGTG-GGACCGGGACGCGGTTCGGCCGCCGGGTCGGTCGTGGCATACGCCCTCGGG 98685 Query 113152 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGAC 113211 || || |||||||||||||| ||||||||| | |||||||| || |||| || ||| Sbjct 98684 ATAACTAATATCGACCCGATCAAATACGACCTGCTTTTCGAGCGTTTCCTCAATCCCGAC 98625 Query 113212 CG--CCCCGACTTCCCCGACATCGACGTCGACTTC 113244 || | || ||| ||||| |||||| |||| ||| Sbjct 98624 CGTATCTCG-CTT-CCCGATATCGACATCGATTTC 98592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493907690558080