Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq3213 145 7e-30 seq3211 114 1e-20 >seq3213 Length=2170589 Score = 145 bits (160), Expect = 7e-30 Identities = 193/264 (73%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 36725 TTTAATCCTTATGCAAGATCACATGCTGGTGCAATGGGATTAATGCAATTGATGCCGGGA 36784 ||||||||| | |||| ||| || || |||||||||||||| |||||||||||||||| | Sbjct 1084133 TTTAATCCTAAAGCAAAATCGCACGCAGGTGCAATGGGATTGATGCAATTGATGCCGGCA 1084074 Query 36785 ACAGCTAGAAGTTTAGGTGTGACTAATGCATATGACCCATATCAAAATATCATGGGTGGT 36844 ||||| | | ||||||| || ||| |||| ||| | || |||||| | || ||| Sbjct 1084073 ACAGCAAAAGGTTTAGGGGTAACTGATGCTTATAATCCTGTTCAAAACGTAGATGGCGGT 1084014 Query 36845 ACAAAATATCT-CGCTCAACAATTAAAACGATTTGGCGGAAGTATTGAAA---AAGCACT 36900 | |||| | |||| |||| | || | || ||| || || ||| || Sbjct 1084013 GTCAGATATTTAAAATCAATGCTTAACA-AATATAACG---GTAATGTAATTTTAGCGCT 1083958 Query 36901 TGCCGCATATAATGCAGGCCCCGGTAATGTAATAAAATATGGCGGTATTCCACCATTTAA 36960 ||| || || |||||||| |||||| ||| ||||||| |||| ||||||| | ||| Sbjct 1083957 TGCAGCTTACAATGCAGGTCCCGGTGCTGTCGACAAATATGACGGTGTTCCACCTTATAA 1083898 Query 36961 AGAAACGCAAAATTATGTAAGAAG 36984 |||||| ||||||||||| ||||| Sbjct 1083897 AGAAACACAAAATTATGTCAGAAG 1083874 >seq3211 Length=33002 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 112479 GTAAAAGGTTGACTTGCCGTTAATACGATAGCACCATTATCTTTAATAATTCTTTTATAT 112538 ||||| || ||| ||| || |||| || || |||| ||||||||||| ||||||||| Sbjct 23483 GTAAATGGCTGAGATGCGGTCAATATAATTGCGGCATTGTCTTTAATAATCCTTTTATAT 23542 Query 112539 TGTTTCCATAATTCATCTAGTGGAATTAATGTGTCCCATTTACATTCAGTAGTCCCGTAT 112598 || | ||||| || ||| | ||| |||| | | ||||||| ||| || || || ||| Sbjct 23543 TGATGCCATAGTTTATCAATTGGTATTATTTTATCCCATTCACAACTTGTCGTGCCATAT 23602 Query 112599 GGAAGATCGCATAAAATCATGTCAATTGATTTATCTGGAAT 112639 || | ||||||||| || | || ||||||||||| ||||| Sbjct 23603 GGTAAATCGCATAAGATTAAATCTATTGATTTATCAGGAAT 23643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451885517266560