Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq373 136 3e-27 seq179 127 2e-24 seq3099 118 9e-22 seq1599 102 7e-17 seq1802 93.3 3e-14 seq2282 86.0 5e-12 >seq373 Length=1274844 Score = 136 bits (150), Expect = 3e-27 Identities = 301/445 (68%), Gaps = 11/445 (2%) Strand=Plus/Minus Query 125924 TTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAATC 125983 ||| || || | |||||||||||| |||||| | || |||||||| || || ||||| Sbjct 929766 TTAAACAGCTACTGGTGCTTTAATATGAGGGTGAGCTTGATAATTTACTAACTCAAAATC 929707 Query 125984 TTCATAATTAATATCAAAAAT-TGATTTA--TCTGTATTAATTTTTAATTGAGGTGGTAG 126040 ||||| |||| | |||| || | |||| |||| |||||| || | ||| | | Sbjct 929706 CTCATATTTAAAACCAAAGATATCTTTTACCTCTGGATTAATCTTCATGGTAGGCAATGG 929647 Query 126041 ATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGC 126100 ||| | ||||| ||| || || || | |||||| | || ||| ||| Sbjct 929646 GTAAGGCGTGCGAGATAACTGTAAATCAGTTTGTTCTAGATGATT--ACTATATAAGTGG 929589 Query 126101 --ATCTCCAAATGTATGAATGAATTCACCCA--CCTCAAGTCCACATTCTTTTGCAACAA 126156 ||| ||| || ||| || ||||| | ||| || | || | ||| || || | Sbjct 929588 CTATCACCACCCGTCCAAATAAAATCACCTAACCCTAAATTACAAA--CTTGCGCCACCA 929531 Query 126157 GATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCAC 126216 |||| ||| |||||||| |||||||| || |||||||| | || |||||||| Sbjct 929530 TCATCGTCAATAATGCATAACTAGCAATATTAAAGGGAACACCAAGGAAAATATCAGCTG 929471 Query 126217 TTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGT 126276 | |||||||| ||||| || ||| || ||| || |||||||| || | | | Sbjct 929470 AACGCTGATATAACTGACATGATAGTTTTCCATCTGCCACATAAAATTGGAATAAGGCAT 929411 Query 126277 GGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTGAC 126336 |||||||||||| ||||||| ||| | | | ||| ||||| ||||| ||||| || Sbjct 929410 GGCAAGGTGGTAGTGCCATTTCATCTACTAATGCAGGGTTCCAAGCTGAGACAATCAAAC 929351 Query 126337 GTCGAGAGTTTGGATTGGTTTTAAT 126361 | || || | ||||| || ||||| Sbjct 929350 GCCGCGAATCAGGATTAGTGTTAAT 929326 >seq179 Length=2312354 Score = 127 bits (140), Expect = 2e-24 Identities = 278/414 (67%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 125921 TTTTTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAA 125980 || |||||| |||| | | |||| ||| ||| || | |||||||||| | ||| || Sbjct 182893 TTATTATACTGCAACAATTCCTTTTATATGAGGATGAGGATCATAATTTACAAGTTCAAA 182834 Query 125981 ATCTTCATAATTAATATCAAAAAT-TGATTTA--TCTGTATTAATTTTTAATTGAGGTGG 126037 ||||||||| |||| ||||||||| | |||| || | ||| || || | | ||| Sbjct 182833 ATCTTCATATTTAAAATCAAAAATGTTTTTTACTTCCGGATTGATCTTCATCTCGGGTAA 182774 Query 126038 TAGATAACTATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAAATATG 126097 | | |||| || || | || || | |||||| ||| ||||| Sbjct 182773 TTTTTTTGGTGCTCTGCTCAACTGAAGTTCTACCTGTTCAAAATGATTTAGATATATATG 182714 Query 126098 TGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAG 126157 ||||||| ||||| || || ||||| ||| | ||| | | | ||| || | Sbjct 182713 CACATCTCCGAATGTGTGTATAAATTCGTAAGCCTGATATCCGGTTACCTGTGCCACCAT 182654 Query 126158 ATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACT 126217 ||| || | ||||| ||||||||| ||||| || || | ||| | ||| ||||| Sbjct 182653 CATTGTAAGGAGTGCATATGATGCAATATTAAAAGGGACTCCCAGAAAAAGATCGGCACT 182594 Query 126218 TCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTG 126277 || |||||| | ||| || |||||| || || ||| ||||| ||||| |||||||| Sbjct 182593 TCGTTGATAAAGTTGGCATGATAATTTTCCGTCGGATACATAAAACTGAAAAATTGTGTG 182534 Query 126278 GCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAAT 126331 ||| || || || |||||| ||| | |||| | ||||||||| |||||| Sbjct 182533 GCATGGAGGCAAAGCCATTTTATCCACATCAGCAACATTCCATGCACTAACAAT 182480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 126606 TTTTCAAATGCCCATTCATTCCATATATTGTTATT--ATATTTAAGTAGGTATTGAATGT 126663 |||||| |||||||| |||||||| || || | || || | ||| |||| || | Sbjct 182355 TTTTCATCGGCCCATTCGTTCCATATTTT--TACTCCATGTTCATTTAGATATTTTATAT 182298 Query 126664 TTGTATCTCCTTTAATAAACCATAATAATTCAGTTGCTACTAATTTAAAAGAAACCTTTT 126723 | |||||||| || | |||||||||||||||| || | |||| ||| || |||| Sbjct 182297 TGGTATCTCCGTTCAAAAACCATAATAATTCATAAATTATTGATTTTAAATGAAGTTTTT 182238 Query 126724 TGGTTGTAAGTAAAGGAAACCCTT 126747 ||||||| || | |||||||||| Sbjct 182237 TGGTTGTCAGACACGGAAACCCTT 182214 >seq3099 Length=1637421 Score = 118 bits (130), Expect = 9e-22 Identities = 238/350 (68%), Gaps = 5/350 (1%) Strand=Plus/Plus Query 125941 CTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAATCTTCATAATTAATATCAA 126000 |||||||| || || | || || || |||||| || ||||| || |||| ||| | Sbjct 176320 CTTTAATATGTGGATGAGGGTCGTATCCTACCAATTCAAAGTCTTCGTATTTAAAATCGA 176379 Query 126001 AAATTGATTT---ATCTGTATTAATTTTTAATTGAGGTGGTAGATAACTATCTCTTGATA 126057 | || ||| ||||| ||||||||| | || || || | ||| | || | Sbjct 176380 ATATACTTTTTACATCTGGATTAATTTTCATTTCGGGCAAAGGACGAAAATCACGTGTCA 176439 Query 126058 ATTGT-GTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGA 126116 ||||| || | || ||| | |||||| | ||| ||||| ||||| || |||||||| Sbjct 176440 ATTGTAGTTTAACCTG-ATCTAGATGATTTGTATATATATGGGCATCACCCAATGTATGT 176498 Query 126117 ATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAA 126176 | || || || | || || || | | | || | | | || |||||||||| Sbjct 176499 ACAAAATCTCCGGCTTCGAGACCGGTTACCTGAGCCATCATCTTCAACAATAAAGCATAA 176558 Query 126177 CTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAA 126236 ||||||||||| |||||||||||||||||||| || || |||||||| | ||| Sbjct 176559 GAAGCAATATTGAACGGAACACCTAAAAATATATCGGCGCTCCTTTGATACAGTTGCAGG 176618 Query 126237 TTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGG 126286 | |||||||| || || ||||| ||||| | || |||||||| || Sbjct 176619 CTCAATTTACCATCGGCCACATAAAACTGAAAAAATGCATGGCAAGGAGG 176668 >seq1599 Length=3738065 Score = 102 bits (112), Expect = 7e-17 Identities = 247/371 (67%), Gaps = 5/371 (1%) Strand=Plus/Minus Query 125923 TTTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAAT 125982 ||||||| || | | |||||||| || || | || ||||| | |||||| |||| Sbjct 2426835 TTTATACGGCCACATCCCCTTTAATATGTGGATGCGGATCGTAATTCAACAATTCAAAAT 2426776 Query 125983 CTTCATAATTAATATCAAAAATTGATTTA---TCTGTATTAATTTTTAATTGAGGTGGTA 126039 ||||||| |||| || || || |||| || | ||| ||||| | | ||| || Sbjct 2426775 CTTCATATTTAAAATTGAAGATACTTTTAACGTCCGGATTTATTTTCATCCGGGGTAATA 2426716 Query 126040 GATAACTATCTCTTGATAATTGTGTATGTA-TTGCATCCATATGATTGGAATAAATATGT 126098 | ||||||| ||||| || | ||| || |||||||| |||| | ||| Sbjct 2426715 AACGGGGCTCTCTTGCCAATTGCAAATTAACCTGC-TCTATATGATTACAATACACATGA 2426657 Query 126099 GCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGA 126158 ||||| || |||||||| | ||| ||||| |||| | ||| | | || | | Sbjct 2426656 GCATCACCTAATGTATGTACGAAATCACCAGCCTCCAAACCAGTAACCTGCGCCATCATC 2426597 Query 126159 TGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTT 126218 ||| | || |||||| ||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 2426596 TGTAATAACAATGCATAAGAAGCAATGTTGAACGGCACACCCAAAAAAATATCAGCGCTT 2426537 Query 126219 CTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGG 126278 | |||||||| || || |||| || || |||||||| || || | || || Sbjct 2426536 CGTTGATATAGCTGCAAACTTAACCGGCCATCAGCCACGTAAAACTGGAAAAAAGTATGA 2426477 Query 126279 CAAGGTGGTAA 126289 || || || || Sbjct 2426476 CATGGCGGCAA 2426466 >seq1802 Length=645375 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 75170 CTTATCTCTCACCTGTTGTTTCTTTAGACTTTCTTCTCCTCCCCAATGTTCAACTGGCTT 75229 |||||| ||| ||| || || |||| |||||||||||||||||||| || |||| | Sbjct 165241 CTTATCACTCGATTGTCTTTGTTTAAGACCTTCTTCTCCTCCCCAATGTTTAATTGGCAT 165300 Query 75230 ATAGTGTTGAACACCATTATATTCAAAACCAATTTTCAATTCCGGTACATAAATATCTAT 75289 ||| || || || | |||||||| |||||||| ||||| | | | ||||||||| Sbjct 165301 ATAATGCTGTTGTCCCTGATATTCAATACCAATTTGTAATTCAGCAATAAAAATATCTAA 165360 Query 75290 TTCTAAACCTTCAAGAAAGTTTGGTCTACAATGACGTTCGCATTCATAATTTTCAAAGAT 75349 ||| || || || | ||| || ||||| || ||| | ||| | Sbjct 165361 TTCCAACCCCTCCATTTCATTTCCCCTGTAATGAAAAATAGGTTTATATTGAGGAAATCT 165420 Query 75350 ATCTTCAACAATTTTAAACATCATAGTTTCAGATATCCAACCTTCTCCTATTTTAG 75405 |||| ||| || ||||||| |||| || ||| |||| ||||||||||||| Sbjct 165421 CTCTTTAACTATATTAAACAAACTAGTCTCCGATGTCCATTTCTCTCCTATTTTAG 165476 >seq2282 Length=143344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 126605 ATTTTCAAATGCCCATTCATTCCATATATT---GTTATTATATTTAAGTAGGTATTGAAT 126661 ||||||| |||||||||||||| || | | ||||| || ||| ||| | ||| Sbjct 11694 ATTTTCATCAGCCCATTCATTCCAGATTCTACCGCCATTATCTTGAAG---GTACTTAAT 11750 Query 126662 GTTTGTATCTCCTTTAATAAACCATAATAATTCAGTTGCTACTA-ATTTAAAAGAAACCT 126720 |||||||| ||||| ||||||||||| | |||| | || || ||| | | | | Sbjct 11751 ATTTGTATCGCCTTTTATAAACCATAAAAGTTCA-TGAATAATACTTTTCAGATGCATTT 11809 Query 126721 TTTTGGTTGTAAGTAAAGGAAACCCTTTGGTTAAATCGAAACGCAATTGATGCCCAAA 126778 |||| ||||| | |||||| || ||||| | |||||| || |||| || || ||||| Sbjct 11810 TTTTAGTTGTCATTAAAGGGAAACCTTTAGATAAATCAAAGCGCATCTGCTGACCAAA 11867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408474940971944