Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq783 178 3e-39 seq2315 138 3e-27 seq242 132 1e-25 seq1551 98.7 2e-15 seq779 84.2 5e-11 >seq783 Length=580412 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| ||||| || || |||||||| ||||| || || | ||||| Sbjct 390122 ACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGT 390063 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| ||||||||||| || ||||| | | |||||||| || |||| || Sbjct 390062 TCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCC 390003 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| ||||| ||| || |||||||| ||||| ||| ||||| || || Sbjct 390002 TTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAG 389943 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| || || || || |||||||| ||||| | ||||||| Sbjct 389942 AGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCATT 389900 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || ||||| || || || || ||||| || ||||| ||||| | ||| || Sbjct 390350 ACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGT 390291 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| || ||||| | | |||||||| || |||| || Sbjct 390290 TCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCC 390231 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| || || ||| || || ||||| || || || || || || | Sbjct 390230 TTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAA 390171 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || || || ||||| |||||||| | ||||||| Sbjct 390170 AGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCATT 390128 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || || || || || | || ||||||||||| || ||||||||||| || |||| Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | |||||||| || |||| |||||||||||||| ||||| ||| ||||||| Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTT 390427 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||| ||||| || || || || | |||||| || || || || || || || || | Sbjct 390426 CGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGA 390367 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 390366 AAATCTGCAT 390357 >seq2315 Length=138946 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| ||||| ||||| | || || | ||||| ||||||||||| || || |||| Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 |||| | ||| || |||||||||| ||||||||||| || |||||| ||| || |||| Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || ||||| ||| || || | ||||| || ||||| || | |||||| || | Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141 Query 211105 ACACCTGCATT 211115 | | |||||| Sbjct 27140 AGATTTGCATT 27130 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| |||||||| || | ||| || | ||||||||||||||| || |||||||| | Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | || || |||||||||| || || ||||| || || ||| ||| || || | Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCT 26848 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | ||||| ||||| ||| ||||| || || || || || || || ||||| || |||| Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 26787 AAATCTGCAT 26778 >seq242 Length=1788442 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || || |||||||| | || || | |||||| || |||||||| || || || | Sbjct 1569966 CTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAA 1569907 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | | ||||| |||||||| | ||||||||||| ||||| || |||||| |||| Sbjct 1569906 TCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACATTTT 1569847 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || |||||| |||||||||||| || || || || ||||| | ||| || || | Sbjct 1569846 CAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACGA 1569787 Query 211105 ACACCTGCATT 211115 | | ||||||| Sbjct 1569786 ATATCTGCATT 1569776 >seq1551 Length=444118 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| ||||| ||||| || || || || || | | || |||||||| || Sbjct 25359 ACCAGATGAAGTGTGGATTCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCA 25418 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || ||||| | | |||||||| ||||||| ||||||||| ||| Sbjct 25419 AGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGAGGAATGCCTTCCTTGCTCTGA 25478 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 || || ||| ||||||| || ||||| || Sbjct 25479 ATTTTGGATTTAACGTTTTTAATCGTGTCTGA 25510 >seq779 Length=683570 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || |||||||| |||||||| ||||| || || || | | || | |||||| Sbjct 346010 AGCACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAGTCTGACAAAGTGCGGCCATCT 345951 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || ||||||||||| || ||||| || ||||| ||||| || |||| Sbjct 345950 TCAAGCTGCTTGCCGGCAAAGATCAGACGTTGCTGGTCTGGGGGAA 345905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158783798265080