Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq783 178 3e-39
seq2315 138 3e-27
seq242 132 1e-25
seq1551 98.7 2e-15
seq779 84.2 5e-11
>seq783
Length=580412
Score = 178 bits (196), Expect = 3e-39
Identities = 173/223 (78%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||||| | ||||| ||||| || || |||||||| ||||| || || | |||||
Sbjct 390122 ACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGACAGGGT 390063
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||| ||||||||||| || ||||| | | |||||||| || |||| ||
Sbjct 390062 TCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCC 390003
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| ||||| ||||| ||| || |||||||| ||||| ||| ||||| || ||
Sbjct 390002 TTCCTTATCCTGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAACTTCTAG 389943
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|||||| || || || || |||||||| ||||| | |||||||
Sbjct 389942 AGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCATT 389900
Score = 141 bits (156), Expect = 2e-28
Identities = 165/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| || ||||| || || || || ||||| || ||||| ||||| | ||| ||
Sbjct 390350 ACGAAGTCTCAGCACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGT 390291
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| || ||||| | | |||||||| || |||| ||
Sbjct 390290 TCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCC 390231
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||| || || ||| || || ||||| || || || || || || |
Sbjct 390230 TTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAA 390171
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||| || || || || || ||||| |||||||| | |||||||
Sbjct 390170 AGTAATAGTTTTCCCGGTAAGAGTTTTTACAAAAATCTGCATT 390128
Score = 127 bits (140), Expect = 5e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984
|||| || || || || || | || ||||||||||| || ||||||||||| || ||||
Sbjct 390546 CTTTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGA 390487
Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
| | | |||||||| || |||| |||||||||||||| ||||| ||| |||||||
Sbjct 390486 TCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTTT 390427
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
|||| ||||| || || || || | |||||| || || || || || || || || |
Sbjct 390426 CGATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGA 390367
Query 211105 ACACCTGCAT 211114
| | ||||||
Sbjct 390366 AAATCTGCAT 390357
>seq2315
Length=138946
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984
||||||| ||||| ||||| | || || | ||||| ||||||||||| || || ||||
Sbjct 27320 CTTTTTGTATGTTGTAATCAGACAGTGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGA 27261
Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
|||| | ||| || |||||||||| ||||||||||| || |||||| ||| || ||||
Sbjct 27260 TAAGTCTTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGTATCTTTGCTTTTACATTTT 27201
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
| || || ||||| ||| || || | ||||| || ||||| || | |||||| || |
Sbjct 27200 CAATTGTATCAGATGGTTCCACTTCCAAGGTGATAGTTTTTCCAGTCAAAGTCTTAACGA 27141
Query 211105 ACACCTGCATT 211115
| | ||||||
Sbjct 27140 AGATTTGCATT 27130
Score = 131 bits (144), Expect = 4e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984
||||||| |||||||| || | ||| || | ||||||||||||||| || |||||||| |
Sbjct 26967 CTTTTTGAATGTTATAGTCTGAAAGTGTGCGTCCATCTTCCAGCTGTTTCCCTGCGAAAA 26908
Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
| | | || || |||||||||| || || ||||| || || ||| ||| || || |
Sbjct 26907 TCAATCTCTGCTGATCAGGAGGAATCCCCTCTTTGTCTTGAATTTTTGCTTTTACATTCT 26848
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
| ||||| ||||| ||| ||||| || || || || || || || ||||| || ||||
Sbjct 26847 CAATGGTATCAGATGGTTCCACCTCAAGGGTTATGGTTTTACCAGTAAGAGTTTTCACAA 26788
Query 211105 ACACCTGCAT 211114
| | ||||||
Sbjct 26787 AAATCTGCAT 26778
>seq242
Length=1788442
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984
|||| || || |||||||| | || || | |||||| || |||||||| || || || |
Sbjct 1569966 CTTTCTGAATATTATAATCAGAGAGTGTTCGTCCATCCTCTAGCTGCTTTCCAGCAAAAA 1569907
Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
| | | ||||| |||||||| | ||||||||||| ||||| || |||||| ||||
Sbjct 1569906 TCAATCTCTGTTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCACATTTT 1569847
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
| || || |||||| |||||||||||| || || || || ||||| | ||| || || |
Sbjct 1569846 CAATAGTATCAGAGGCTTCAACCTCGAGGGTAATTGTTTTACCCGTTAAAGTTTTCACGA 1569787
Query 211105 ACACCTGCATT 211115
| | |||||||
Sbjct 1569786 ATATCTGCATT 1569776
>seq1551
Length=444118
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| || ||||| ||||| ||||| || || || || || | | || |||||||| ||
Sbjct 25359 ACCAGATGAAGTGTGGATTCTTTCTGAATATTGTAGTCTGACAATGTTCTTCCATCCTCA 25418
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
||||||||||| || ||||| | | |||||||| ||||||| ||||||||| |||
Sbjct 25419 AGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGAGGAATGCCTTCCTTGCTCTGA 25478
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057
|| || ||| ||||||| || ||||| ||
Sbjct 25479 ATTTTGGATTTAACGTTTTTAATCGTGTCTGA 25510
>seq779
Length=683570
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || |||||||| |||||||| ||||| || || || | | || | ||||||
Sbjct 346010 AGCACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAGTCTGACAAAGTGCGGCCATCT 345951
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008
|| ||||||||||| || ||||| || ||||| ||||| || ||||
Sbjct 345950 TCAAGCTGCTTGCCGGCAAAGATCAGACGTTGCTGGTCTGGGGGAA 345905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158783798265080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |