Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2315 87.8 2e-12 >seq2315 Length=138946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || |||||| || ||||| ||||| | |||||| || | || || Sbjct 33201 ACCAAATGCAGAGTAGACTCTTTCTGAATATTGTAATCTGAAAGTGTGCGACCATCCTCG 33142 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | ||||||||| | || | | ||| || | | || Sbjct 33141 AGCTGTTTGCCAGCAAAAATGAGTCTCTGCTGGTCTGGAGGGATTCCCTCCTTAT-CTTG 33083 Query 39196 ATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | | | || ||| | || | | ||||| | ||||| |||| || || | || Sbjct 33082 AATCTTTGCTTTTACATTCTCAATGGTATCTGAAGGTTCCACTTCCAATGTAATTGTCTT 33023 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || |||||||| ||||| Sbjct 33022 TCCTGTCAAGGTCTTCACAAAGATCTGCAT 32993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429415811723096