Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq783 123 2e-23 seq2315 118 7e-22 seq1551 84.2 1e-11 >seq783 Length=580412 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || || || || ||||| |||||||| |||||||| || | Sbjct 389900 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTC 389959 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||| || ||| || || ||||| | || ||||| || Sbjct 389960 AGACACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCA 390019 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||||||||| || || ||||| | ||| || | ||| ||||| Sbjct 390020 ACAGAGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTCCGACTACAA 390079 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||| || ||| | ||| | || || Sbjct 390080 CATTCAAAAAGAATCTACACTTCATCTTGTGTT 390112 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || ||||| ||||| || |||||||| | | Sbjct 387058 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTTGAAGCTTCA 387117 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || ||| |||||||| || | || ||||| ||| Sbjct 387118 GATACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCTCCAGACCAA 387177 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||| ||||| ||||||||| ||||||||| | | || | || ||||| Sbjct 387178 CAGAGATTAATCTTTGCTGGCAAACAATTGGAAGACGGAAGAACGCTGTCAGACTACAAT 387237 Query 23791 ATACAAAAAG 23800 ||||| |||| Sbjct 387238 ATACAGAAAG 387247 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| || || || ||||| || ||| | ||||| || | | Sbjct 390128 AATGCAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTC 390187 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || | || ||| | ||| | |||||| ||||| ||||| | || ||||| | Sbjct 390188 GGATACGATCGAGAATGTCAAAGC-CAAAATTCAGGACAAGGAAGGCATTCCCCCAGACC 390246 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || || ||||| ||||| || || || |||| || ||| | ||||||| Sbjct 390247 AACAGAGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACA 390306 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 |||| || ||||| || ||| | ||| Sbjct 390307 ACATTCAGAAAGAATCTACACTCCAT 390332 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| |||||| | |||||||| | | Sbjct 391125 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 391184 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| |||||| || || || || | || |||||||| Sbjct 391185 GACACAATCGAAAATGTGAAAGCCAAAATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 391244 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || |||||||| ||||| | ||| || | || |||||| Sbjct 391245 CAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTGTCTGACTACAAC 391304 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 391305 ATTCAGAAGGAATCCAC 391321 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || ||||| |||||| | ||||| || | | Sbjct 390357 ATGCAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCA 390416 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||| ||||| | || ||||| ||| Sbjct 390417 GACACGATCGAAAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAA 390476 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| ||||| || || || || | | | ||| | || ||||| Sbjct 390477 CAGAGATTGATCTTTGCTGGCAAGCAGCTAGAGGATGGAAGGACTCTGTCAGACTACAAT 390536 Query 23791 ATACAAAAAG 23800 || || |||| Sbjct 390537 ATTCAGAAAG 390546 >seq2315 Length=138946 Score = 118 bits (130), Expect = 7e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || ||||| ||||| || || || || | | Sbjct 28022 ATGCAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCT 28081 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||| ||||||| ||||||||||| | || |||||||| Sbjct 28082 GATACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 28141 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| ||||| ||||| |||||||| ||||||| | ||||| | || ||||| Sbjct 28142 CAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAAT 28201 Query 23791 ATACAAAAAG 23800 || ||||||| Sbjct 28202 ATCCAAAAAG 28211 Score = 114 bits (126), Expect = 9e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| |||||||| ||||| || || || || | | Sbjct 27520 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 27579 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||| ||| ||| ||||||||||| | || |||||||| Sbjct 27580 GATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAG 27639 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| ||||| ||||| |||||||| ||||||| | ||||| | || ||||| Sbjct 27640 CAGCGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAAT 27699 Query 23791 ATACAAAA 23798 || ||||| Sbjct 27700 ATTCAAAA 27707 Score = 105 bits (116), Expect = 5e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| |||||||| ||||| || || || || | | Sbjct 28961 ATGCAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCT 29020 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||| ||| ||| ||||||||||| | || ||||| || Sbjct 29021 GATACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAG 29080 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| ||||| ||||| || ||||| ||||||| | ||||| | || ||||| Sbjct 29081 CAGCGATTAATTTTTGCAGGAAAACAGTTGGAAGATGGCCGCACACTGTCGGACTACAAT 29140 Query 23791 ATACAAAA 23798 || ||||| Sbjct 29141 ATTCAAAA 29148 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || || ||||| || || || || || || | | Sbjct 26778 ATGCAGATTTTTGTGAAAACTCTTACTGGTAAAACCATAACCCTTGAGGTGGAACCATCT 26837 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| ||||||| |||||||| || | || || ||||| Sbjct 26838 GATACCATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGGATTCCTCCTGATCAG 26897 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || ||||| |||||||| | |||||| | || || ||| Sbjct 26898 CAGAGATTGATTTTCGCAGGGAAACAGCTGGAAGATGGACGCACACTTTCAGACTATAAC 26957 Query 23791 ATACAAAAAG 23800 || ||||||| Sbjct 26958 ATTCAAAAAG 26967 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || |||||||| || | || |||||||| ||||| | ||||| || | | Sbjct 27130 AATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACTATCACCTTGGAAGTGGAACCATC 27189 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| ||||| ||| || ||||| |||||| | || || ||||| Sbjct 27190 TGATACAATTGAAAATGTAAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCTGATCA 27249 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || || ||||| || | ||||| | |||||||| Sbjct 27250 GCAAAGACTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACACTGTCTGATTACAA 27309 Query 23790 CATACAAAAAG 23800 ||||||||||| Sbjct 27310 CATACAAAAAG 27320 >seq1551 Length=444118 Score = 84.2 bits (92), Expect = 1e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| |||||| | |||||||| | | Sbjct 25339 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAAACCATCACTTTGGAAGTTGAGGCTTCA 25280 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| ||||| || || | || |||| |||||||| Sbjct 25279 GACACAATCGAAAATGTAAAAGCCAAAATCCAGGATAAGGCGGGCATACCTCCAGATCAG 25220 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACT 23759 |||||| | || ||||| || |||||||| Sbjct 25219 CAGCGTCTTATCTTTGCTGGTAAACAACT 25191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337907469554336