Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq714 156 4e-33 >seq714 Length=734366 Score = 156 bits (172), Expect = 4e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| ||| |||||| || ||||| ||||| || |||||||| ||||| | |||||| || Sbjct 47746 TGGATCTCTAATATATGTATCTATAAGTAGACTGTACATTTCTGAATGAACATTTTCCAT 47805 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 ||||| ||||| || || || ||||| |||||||| ||||| ||||| | | ||||| Sbjct 47806 TGCAATTTGAAAGCCATAGAAACATCTTGCTTCTGTGACTTGTACTTCTTGGCTGAATCT 47865 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 |||||| | |||||| ||||| || || || |||||||| || || | || || || Sbjct 47866 TTCTACAAGGTTTTCATTTACAATTCCATCTGATGCTGCAAAGAATGCAAGTACGTGTGA 47925 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 ||| || | | ||| ||| ||||||||| |||||||| || Sbjct 47926 TATGAAATGCCTTTCATCATTTGTAAGTTTTTCCCAGTGGGTCA 47969 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 4373 AAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAAT 4432 ||| |||| ||||||||||||| || ||||| ||||| || | |||||| || ||||| Sbjct 42110 AAGTAATCTATCAGCTACAAATTGAATGTACTGTCTCATAAGGTTGCAGTTCATACCAAT 42169 Query 4433 TA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGA 4491 | |||| || || | || | || | |||||||||||| |||||||| || || | | Sbjct 42170 CATATCT-ACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCAATAGTTACAGCATCCTTAA 42228 Query 4492 TTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACG 4551 | || ||||| | || ||| | || ||||| | || || | |||| | ||| | Sbjct 42229 TAATTTCTTTCACTTCATCCTCAGTCGGTTTTTGAACCAAATGCTTGAACATGAGACATG 42288 Query 4552 CAAAATCACAATGCAAACC 4570 ||||||||||||||| ||| Sbjct 42289 CAAAATCACAATGCAGACC 42307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 |||||| |||||||| | ||||| || || ||||| |||||||||||||| |||||| Sbjct 55191 TAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTACATTTGCCAAAT 55250 Query 5102 ATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||| |||||||||| |||| || |||||||| Sbjct 55251 ATCTTGATACTGAATAGGAAAAATCACAAATCT 55283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426920565895736