Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_030940.1
Length=32637
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 129 1e-25
seq2330 122 2e-23
seq1094 98.7 2e-16
>seq1802
Length=645375
Score = 129 bits (142), Expect = 1e-25
Identities = 265/389 (68%), Gaps = 10/389 (3%)
Strand=Plus/Minus
Query 1425 AACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTC 1484
||||||||| | | || |||||||| || || |||| |||||||| ||||| || |
Sbjct 177161 AACGGAAAGTTGAGACCACTGGGTATTCCAACGATGAAGGACAGGGCGATGCAAGCGTTA 177102
Query 1485 TACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTC 1544
||| | ||||| ||| || | |||||||| |||| || ||| || || |||
Sbjct 177101 TACTTACTCGCACTGGAACCAGTCGCAGAAACAACCGCGGACAGCAACTCTTACGGGTTC 177042
Query 1545 AGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATCCGGAAAG 1604
| | ||| || ||| ||||||| || | ||| ||| ||| | ||||
Sbjct 177041 CGAAAAGAGAGAAGTACGTTTGATGCAAGAGAACAAT-GTTTTCTTG--TATTGGCAAAG 176985
Query 1605 ---GCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAAT 1661
||||| | ||||||||||||| | ||||| |||| || || ||||| ||||
Sbjct 176984 AAAGCTTCCCCTGAATGGATACTGGAAGGAGACATTAAAGGATGCTTCGACCATATCAGC 176925
Query 1662 CATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAG 1721
||||| ||| | || ||| || |||| | ||| || ||||| || ||||||||||||
Sbjct 176924 CATGAATGGTTGCTAAACAATATCCCTATGGATAAAGTGATGCTAAAGAAATGGTTGAAA 176865
Query 1722 GCCGGCGT--GATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCG 1779
|| | || || |||| |||| ||||||| | |||||||| ||||| |
Sbjct 176864 TGTGGTTTTGTATTCAATAAGG--AGCTGTTCCCAACGGAAGAAGGAACACCACAAGGTG 176807
Query 1780 GAATCATCTCGCCTACTTTGGCAAACATG 1808
| || ||||| || |||||||| || |||
Sbjct 176806 GTATAATCTCTCCAACTTTGGCTAATATG 176778
>seq2330
Length=1066040
Score = 122 bits (134), Expect = 2e-23
Identities = 297/444 (67%), Gaps = 12/444 (3%)
Strand=Plus/Plus
Query 1371 AAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGA 1430
||| | || || || ||||| ||| || || || ||| || ||||| ||| |||
Sbjct 999570 AAACGCCGTGGTTATCAACCGATGCCGCTGCGCCGCGTGGAGATACCGAAAAAGAATGGA 999629
Query 1431 AAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTACCTG 1490
||| | |||||| ||||||| || || |||| ||||| || |||||||| ||||| ||
Sbjct 999630 AAGAAACGCCCCTTGGGTATTCCTACGATGAAAGACAGAGCGATGCAGGCTCTCTATCTA 999689
Query 1491 CTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTCAGGATC 1550
| || || |||||||||||||| || || || | || ||| |||||| | |
Sbjct 999690 ATGGCACTCGACCCCATTGCAGAAACTACGGGAGACCAACACTCCTACGGCTTCCGCAAA 999749
Query 1551 GAGCGATCCACGGC-GGATGCAATGTCCCAGTTGTTCGTTTGCCTATC--CGGAAAGGCT 1607
| || | | | ||||||||| || || | | || || ||||| |
Sbjct 999750 TATCG-TAGTTGTCAGGATGCAATAGCCGCGTGTCACAATGTACTTTCAAAGGAAA--TT 999806
Query 1608 TCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGAC 1667
| || ||||| | ||||| | ||||| |||| || || |||||||||| |||||
Sbjct 999807 GCTCCCGAATGGGTGCTGGAAGGTGACATCAAAGGATGCTTCGACCACATCAGCCATGAA 999866
Query 1668 TGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGG- 1726
||||| || | || |||| | ||| || | ||| || || |||||| | ||| ||
Sbjct 999867 TGGCTTCTTGCCAATATCCCTATGGATAAAGAGATGCTACGTAAATGGCTCAAGAGTGGT 999926
Query 1727 --CGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATC 1784
||| | ||| ||| | ||| | || |||| |||||||| |||||||| ||
Sbjct 999927 TATGTGTT---CAATGGCGAACTCTTTCCCACCGATGAGGGAACACCACAAGGCGGCATA 999983
Query 1785 ATCTCGCCTACTTTGGCAAACATG 1808
|| || || ||| | || ||||||
Sbjct 999984 ATTTCTCCCACTCTTGCCAACATG 1000007
>seq1094
Length=2708314
Score = 98.7 bits (108), Expect = 2e-16
Identities = 291/445 (65%), Gaps = 14/445 (3%)
Strand=Plus/Plus
Query 1371 AAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGA 1430
||| | || || || ||||| ||| || || || ||| || || ||| ||| |||
Sbjct 1453516 AAACGCCGTGGCTATCAACCGATGCCGCTGCGCCGCGTGGAGATACCAAAGAAGAATGGA 1453575
Query 1431 AAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTACCTG 1490
||| | |||||| |||| || || || |||| ||||| || |||||||| ||||| ||
Sbjct 1453576 AAGAAACGCCCCTTGGGAATACCCACAATGAAAGACAGAGCGATGCAGGCTCTCTATCTA 1453635
Query 1491 CTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTC----AG 1546
| || || |||||||||||||| || || || | || ||| |||||| |
Sbjct 1453636 ATGGCACTCGACCCCATTGCAGAAACTACGGGAGACCAACACTCCTACGGCTTCCGCAAA 1453695
Query 1547 GATCG-AGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATC--CGGAAA 1603
|||| || || | |||||||| || || | | | |||| |||||
Sbjct 1453696 TATCGCAGTTGTCAA-----GATGCAATAGCCGCGTGTCACAATGTCTTATCAAAGGAAA 1453750
Query 1604 GGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCA 1663
| | || ||||| | |||||| ||||| |||| ||||| |||||||| | |||
Sbjct 1453751 --TTGCCCCCGAATGGGTGTTGGAGGGAGACATTAAAGGATGTTTCGACCACATTAGTCA 1453808
Query 1664 TGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGC 1723
||| ||||| || | || |||| | ||| |||| ||| | || || ||| | ||
Sbjct 1453809 TGAATGGCTTCTCGCCAATATCCCTATGGATAAGGAGATGTTACGTAAGTGGCTCAAAAG 1453868
Query 1724 CGGCGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAAT 1783
|| || ||| || | ||| | || || | ||||| || ||||| || ||
Sbjct 1453869 TGGTTATATATTCAATGGTGAACTCTTCCCCACCGAAGAAGGAACTCCACAAGGTGGCAT 1453928
Query 1784 CATCTCGCCTACTTTGGCAAACATG 1808
|| || || ||| | || ||||||
Sbjct 1453929 AATTTCTCCCACTCTTGCCAACATG 1453953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104286088612496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |