Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq1802 129 1e-25 seq2330 122 2e-23 seq1094 98.7 2e-16 >seq1802 Length=645375 Score = 129 bits (142), Expect = 1e-25 Identities = 265/389 (68%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 1425 AACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTC 1484 ||||||||| | | || |||||||| || || |||| |||||||| ||||| || | Sbjct 177161 AACGGAAAGTTGAGACCACTGGGTATTCCAACGATGAAGGACAGGGCGATGCAAGCGTTA 177102 Query 1485 TACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTC 1544 ||| | ||||| ||| || | |||||||| |||| || ||| || || ||| Sbjct 177101 TACTTACTCGCACTGGAACCAGTCGCAGAAACAACCGCGGACAGCAACTCTTACGGGTTC 177042 Query 1545 AGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATCCGGAAAG 1604 | | ||| || ||| ||||||| || | ||| ||| ||| | |||| Sbjct 177041 CGAAAAGAGAGAAGTACGTTTGATGCAAGAGAACAAT-GTTTTCTTG--TATTGGCAAAG 176985 Query 1605 ---GCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAAT 1661 ||||| | ||||||||||||| | ||||| |||| || || ||||| |||| Sbjct 176984 AAAGCTTCCCCTGAATGGATACTGGAAGGAGACATTAAAGGATGCTTCGACCATATCAGC 176925 Query 1662 CATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAG 1721 ||||| ||| | || ||| || |||| | ||| || ||||| || |||||||||||| Sbjct 176924 CATGAATGGTTGCTAAACAATATCCCTATGGATAAAGTGATGCTAAAGAAATGGTTGAAA 176865 Query 1722 GCCGGCGT--GATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCG 1779 || | || || |||| |||| ||||||| | |||||||| ||||| | Sbjct 176864 TGTGGTTTTGTATTCAATAAGG--AGCTGTTCCCAACGGAAGAAGGAACACCACAAGGTG 176807 Query 1780 GAATCATCTCGCCTACTTTGGCAAACATG 1808 | || ||||| || |||||||| || ||| Sbjct 176806 GTATAATCTCTCCAACTTTGGCTAATATG 176778 >seq2330 Length=1066040 Score = 122 bits (134), Expect = 2e-23 Identities = 297/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 1371 AAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGA 1430 ||| | || || || ||||| ||| || || || ||| || ||||| ||| ||| Sbjct 999570 AAACGCCGTGGTTATCAACCGATGCCGCTGCGCCGCGTGGAGATACCGAAAAAGAATGGA 999629 Query 1431 AAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTACCTG 1490 ||| | |||||| ||||||| || || |||| ||||| || |||||||| ||||| || Sbjct 999630 AAGAAACGCCCCTTGGGTATTCCTACGATGAAAGACAGAGCGATGCAGGCTCTCTATCTA 999689 Query 1491 CTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTCAGGATC 1550 | || || |||||||||||||| || || || | || ||| |||||| | | Sbjct 999690 ATGGCACTCGACCCCATTGCAGAAACTACGGGAGACCAACACTCCTACGGCTTCCGCAAA 999749 Query 1551 GAGCGATCCACGGC-GGATGCAATGTCCCAGTTGTTCGTTTGCCTATC--CGGAAAGGCT 1607 | || | | | ||||||||| || || | | || || ||||| | Sbjct 999750 TATCG-TAGTTGTCAGGATGCAATAGCCGCGTGTCACAATGTACTTTCAAAGGAAA--TT 999806 Query 1608 TCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCATGAC 1667 | || ||||| | ||||| | ||||| |||| || || |||||||||| ||||| Sbjct 999807 GCTCCCGAATGGGTGCTGGAAGGTGACATCAAAGGATGCTTCGACCACATCAGCCATGAA 999866 Query 1668 TGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGCCGG- 1726 ||||| || | || |||| | ||| || | ||| || || |||||| | ||| || Sbjct 999867 TGGCTTCTTGCCAATATCCCTATGGATAAAGAGATGCTACGTAAATGGCTCAAGAGTGGT 999926 Query 1727 --CGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAATC 1784 ||| | ||| ||| | ||| | || |||| |||||||| |||||||| || Sbjct 999927 TATGTGTT---CAATGGCGAACTCTTTCCCACCGATGAGGGAACACCACAAGGCGGCATA 999983 Query 1785 ATCTCGCCTACTTTGGCAAACATG 1808 || || || ||| | || |||||| Sbjct 999984 ATTTCTCCCACTCTTGCCAACATG 1000007 >seq1094 Length=2708314 Score = 98.7 bits (108), Expect = 2e-16 Identities = 291/445 (65%), Gaps = 14/445 (3%) Strand=Plus/Plus Query 1371 AAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCGAAGTCGAACGGA 1430 ||| | || || || ||||| ||| || || || ||| || || ||| ||| ||| Sbjct 1453516 AAACGCCGTGGCTATCAACCGATGCCGCTGCGCCGCGTGGAGATACCAAAGAAGAATGGA 1453575 Query 1431 AAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAGGCACTCTACCTG 1490 ||| | |||||| |||| || || || |||| ||||| || |||||||| ||||| || Sbjct 1453576 AAGAAACGCCCCTTGGGAATACCCACAATGAAAGACAGAGCGATGCAGGCTCTCTATCTA 1453635 Query 1491 CTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTATGGCTTC----AG 1546 | || || |||||||||||||| || || || | || ||| |||||| | Sbjct 1453636 ATGGCACTCGACCCCATTGCAGAAACTACGGGAGACCAACACTCCTACGGCTTCCGCAAA 1453695 Query 1547 GATCG-AGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATC--CGGAAA 1603 |||| || || | |||||||| || || | | | |||| ||||| Sbjct 1453696 TATCGCAGTTGTCAA-----GATGCAATAGCCGCGTGTCACAATGTCTTATCAAAGGAAA 1453750 Query 1604 GGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATCAATCA 1663 | | || ||||| | |||||| ||||| |||| ||||| |||||||| | ||| Sbjct 1453751 --TTGCCCCCGAATGGGTGTTGGAGGGAGACATTAAAGGATGTTTCGACCACATTAGTCA 1453808 Query 1664 TGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTGAAGGC 1723 ||| ||||| || | || |||| | ||| |||| ||| | || || ||| | || Sbjct 1453809 TGAATGGCTTCTCGCCAATATCCCTATGGATAAGGAGATGTTACGTAAGTGGCTCAAAAG 1453868 Query 1724 CGGCGTGATCCACAAAGGCCAGCTCCAGGCAACGGATGCTGGAACACCTCAAGGCGGAAT 1783 || || ||| || | ||| | || || | ||||| || ||||| || || Sbjct 1453869 TGGTTATATATTCAATGGTGAACTCTTCCCCACCGAAGAAGGAACTCCACAAGGTGGCAT 1453928 Query 1784 CATCTCGCCTACTTTGGCAAACATG 1808 || || || ||| | || |||||| Sbjct 1453929 AATTTCTCCCACTCTTGCCAACATG 1453953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104286088612496