Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq1191 127 3e-24 seq179 113 6e-20 seq1991 111 2e-19 seq2298 107 3e-18 seq1948 107 3e-18 seq2441 95.1 2e-14 >seq1191 Length=1801643 Score = 127 bits (140), Expect = 3e-24 Identities = 179/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||||||||||||||| | | ||||| || || | |||| | | ||| Sbjct 1359089 GACCGTACGGGAACCGGTACTATCAGCGTCTTCGGACATCAAAGCCGTTACGACCTGTCG 1359030 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATGCGTTCGATTATTCACGAACT 99321 |||||||||||| || | || || ||| |||| ||| | || ||||| ||||| | Sbjct 1359029 GAAGGCTTTCCGGTGCTGACTACCAAGAAGCTG-CACCTTAAGTCCATTATATACGAATT 1358971 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 ||| ||||| ||| ||||||||||||||| |||||||| | || |||| || ||| Sbjct 1358970 GCTATGGTTTCTGGCAGGCGATACCAATGTAAAATATTTGCAGGAACATGGAGTGCGTAT 1358911 Query 99382 TTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 ||| |||||||| || | ||||||| || || | |||||||| | || ||||| Sbjct 1358910 ATGGAACGAATGGGCTGACGAGAATGGCGAACTAGGCCATATATACGGTTATCAATGGCG 1358851 Query 99442 GTCTTGGCC 99450 || ||||| Sbjct 1358850 TTCGTGGCC 1358842 >seq179 Length=2312354 Score = 113 bits (124), Expect = 6e-20 Identities = 183/261 (70%), Gaps = 12/261 (5%) Strand=Plus/Plus Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTA---TTTTCGGGCACCAGATGCGTTTC 99253 || ||||||||||| ||||| || || ||| | ||||||| |||||||| | || Sbjct 182147 AAAAAAGACCGTACAGGAACAGGAAC---GTCCAGCGTTTTCGGTTACCAGATGAGATTT 182203 Query 99254 AATCTGCAAGAAGGCTTTCCG---CTGGTAACGACTAAGCGCTGTCACATGCGTTCGATT 99310 || || || ||||| |||||| ||| ||| | || | ||| | || || Sbjct 182204 AACCTTCAGGAAGGGTTTCCGTGTCTGACAACCAAAAAAC---TTCATTTAAAATCAATA 182260 Query 99311 ATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAAT 99370 ||| | ||| | | ||||| |||| || ||||||||| | |||||| ||||||| || Sbjct 182261 ATTTATGAATTATTATGGTTTTTGAACGGAGATACCAATATAAAATATCTAAATGAACAT 182320 Query 99371 GGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGT 99430 || |||| || ||| |||||||| | || | || |||||||||| |||||||| Sbjct 182321 GGAGTAAAAATATGGAACGAATGGGCCGATGAAAACGGAGACCTCGGACATGTATACGGA 182380 Query 99431 AAACAGTGGCGGTCTTGGCCT 99451 | || ||||| || |||||| Sbjct 182381 TATCAATGGCGTTCATGGCCT 182401 >seq1991 Length=147557 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 |||| ||||| || ||||| || || | | ||||||||||||||||||| || | Sbjct 6618 AAGAGCGACCGGACAGGAACGGGCACGATCAGTGTTTTCGGGCACCAGATGCGCTTTGAC 6559 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGAC-TAAGCGCTGTCACATGCGTTCGATTATTCA 99315 || | || || ||||| | | || || || ||| || | || ||||| || || Sbjct 6558 CTCAATGAGGGTTTTCCCGTACTGACCACAAAAAAACTG-CATCTACGCTCGATCATACA 6500 Query 99316 CGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGT 99375 ||||| |||||||| || || || ||||||||| | |||||| | | |||||| || Sbjct 6499 TGAACTTCTGTGGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAATAACGT 6440 Query 99376 AACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACA 99435 || || |||||||| ||| | | || ||| |||| || ||||| ||||| | || Sbjct 6439 TACGATATGGGACGAGTGGGCGGATGCCGACGGCAACCTGGGCCCGGTCTACGGATACCA 6380 Query 99436 GTGGCGGTCTTGGCC 99450 |||||| |||||| Sbjct 6379 GTGGCGCAGTTGGCC 6365 >seq2298 Length=83281 Score = 107 bits (118), Expect = 3e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 |||||||||||||| ||||| | | ||||| | || |||||||| ||| || || Sbjct 73449 GACCGTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTAATTTGGAA 73390 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACATGCGTTCGATTATTCACGAACT 99321 || || || || | ||||||| ||| ||| || || ||||||||| | || | Sbjct 73389 GAGGGTTTCCCTGTTTTAACGACAAAGAAACTG-CATCTGAAATCGATTATTTATGAGTT 73331 Query 99322 GCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTAT 99381 ||| ||||| | || || ||||||||| | |||||| |||| ||| | || || | ||| Sbjct 73330 GCTATGGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGCGTTAGTAT 73271 Query 99382 TTGGGACGAATGG 99394 ||||||||||||| Sbjct 73270 TTGGGACGAATGG 73258 >seq1948 Length=475166 Score = 107 bits (118), Expect = 3e-18 Identities = 188/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 99185 GAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCT--GTCTATTTTCGGGCACC 99242 ||||| || ||| ||||||| || |||||||| ||| || ||||| || |||| Sbjct 215244 GAAGGAGTAAAGAAAGAAGACCGAACCGGAACCGGAACCTATAGTGTATTT--GGTCACC 215301 Query 99243 AGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGC 99302 ||||||| || || || ||||||| ||||| || | || || || | || | Sbjct 215302 AGATGCGGTTTAACATGGAAGAAGGATTTCCTTTGCTTACCACCAAAAAATTACATCTTA 215361 Query 99303 GTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAA 99362 |||||||| |||| || |||||||| |||||||| || || || | |||||||| Sbjct 215362 AATCGATTATATACGAGCTACTGTGGTTTCTGAAAGGAGACACGAACGCTAAATATTTGC 215421 Query 99363 ATGATAATGGTGTAACTATTTGGGACGAAT-GGAAGAACAAAGATGGCGACCTCGGACCG 99421 | ||| ||||||| ||| ||| |||||| || ||| | | |||| | || |||| Sbjct 215422 AAGATCATGGTGTTCGTATCTGGAACGAATGGGCAGATGAGA-ATGGTAATCTTGGACAT 215480 Query 99422 GTATACGGTAAACAGTGGCGGTCTTGGCC 99450 | ||||| | || ||||| || ||||| Sbjct 215481 ATTTACGGGTATCAATGGCGTTCGTGGCC 215509 >seq2441 Length=2995558 Score = 95.1 bits (104), Expect = 2e-14 Identities = 212/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 99142 AATCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCGTGCCGAAGAA 99201 ||||||| |||| ||| |||||| | | | ||| | | |||||||| | || | Sbjct 2867190 AATCATGAAACAATATTTGGATTTACTAGATAGAGTACTAAAAGAAGGCGTACACAAAGA 2867131 Query 99202 AGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCA 99261 ||||||||| || || || || | | ||||| |||||||||||||| | || | Sbjct 2867130 AGACCGTACAGGCACAGGAACAATCAGCGTATTCGGACACCAGATGCGTTTTGACCTTAA 2867071 Query 99262 AGAAGGCTTTCCGCTG-GTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAA 99319 || || ||||| || | || || ||| ||| |||| || || |||||||| ||| Sbjct 2867070 CGATGG-TTTCCCATGCCTGACTACCAAGAAGCT-TCACCTGAAATCCATTATTCATGAA 2867013 Query 99320 CTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACT 99379 || || ||||| ||||||| ||||| ||||| || || | | || || || ||| | Sbjct 2867012 CTTCTATGGTTTTTGAAAGGTGATACAAATGTTAAGTACCTCCAAGACAACGGAGTACGT 2866953 Query 99380 ATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGG 99439 || ||| | |||||| || | | || || | || | || || || | || ||| Sbjct 2866952 ATCTGGAATGAATGGGCAGACGAGAACGGAGAATTAGGTCACGTTTATGGATACCAATGG 2866893 Query 99440 CGGTCTTGGCCTG 99452 || || ||||||| Sbjct 2866892 CGTTCCTGGCCTG 2866880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716241967806400