Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq1948 87.8 3e-12 seq1619 87.8 3e-12 >seq1948 Length=475166 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 202542 AAAGAAAGACCGTACCGGCACCGGCACGCGCTCCT-TGTTCGGGGCCCAGATGCGGTTTG 202600 |||||| ||||| ||||| ||||| || | | | | || || ||||||||||||| Sbjct 215256 AAAGAA-GACCGAACCGGAACCGGAAC-CTATAGTGTATTTGGTCACCAGATGCGGTTTA 215313 Query 202601 ACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTC 202660 || || ||||| || || || | ||||| ||||| | || || || || || Sbjct 215314 ACATGGAAGAAGGATTTCCTTTGCTTACCACCAAAAAATTACATCTTAAATCGATTATAT 215373 Query 202661 ACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGG 202720 ||||||| |||||||| |||||||| ||||| ||| | || || | ||| | || | Sbjct 215374 ACGAGCTACTGTGGTTTCTGAAAGGAGACACGAACGCTAAATATTTGCAAGATCATGGTG 215433 Query 202721 TCACTATCTGGGACGAATGGGC 202742 | ||||||| |||||||||| Sbjct 215434 TTCGTATCTGGAACGAATGGGC 215455 >seq1619 Length=182432 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/143 (75%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 2630 TAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGAGTCCTCTCT 2689 ||| ||| |||||||||| ||||||||||||||| || | ||||||| |||| ||| Sbjct 25681 TAGCTCAGTTGGTAGAGCAGCGGTCTCCAAAACCGCGTGCCGAGGGTTCGAATCCT-TCT 25623 Query 2690 -TCCCTGCCAAACAGTAGGACTGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGG 2748 |||||||||| | | | |||| |||| ||||||| || ||||||||| | Sbjct 25622 GCCCCTGCCAAA---TGGCCCGGTAGTTCAGTTGGTTAGAACGCTAGCCTGTCACGCTAG 25566 Query 2749 AGGTCGCGGGTTCGAAACCCGTC 2771 |||||| |||||||| ||| || Sbjct 25565 AGGTCGTGGGTTCGAGTCCCATC 25543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788075699632000