Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_031020.1
Length=163201
Score E
Sequences producing significant alignments: (Bits) Value
seq179 100 3e-16
seq1752 95.1 1e-14
seq3213 93.3 4e-14
seq1094 93.3 4e-14
seq4222 91.5 2e-13
seq1604 91.5 2e-13
seq3436 87.8 2e-12
>seq179
Length=2312354
Score = 100 bits (110), Expect = 3e-16
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 786897 CAGGATTCGAACCTGAGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 786954
>seq1752
Length=186427
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAAG 66474
||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct 14639 CAGGATTCGAACCTGAGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTACG 14698
Query 66475 AG 66476
||
Sbjct 14699 AG 14700
>seq3213
Length=2170589
Score = 93.3 bits (102), Expect = 4e-14
Identities = 62/68 (91%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 66407 ACACCCT--ACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAG 66464
||||||| ||| ||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 2104430 ACACCCTGGACAAGATTCGAACTTGTGACCTACCGCTTAGAAGGCGGTTGCTCTATCCAG 2104489
Query 66465 CTGAGCTA 66472
||||||||
Sbjct 2104490 CTGAGCTA 2104497
>seq1094
Length=2708314
Score = 93.3 bits (102), Expect = 4e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 52777 ACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCT 52836
|||||||| || |||||||||||||||| ||| |||||||| || | ||||||||
Sbjct 382177 ACAGCATATCCTGAAACACGGATAGTCAGCTGAGGGTATTTCTCTGGATGCTCCATCGCA 382236
Query 52837 TCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTG 52880
|| |||||||||||| |||| ||| || || |||||||| ||
Sbjct 382237 TCTTCCAACATTTCACGGTTCAGTACATTTACATTCAGGTGGTG 382280
Score = 93.3 bits (102), Expect = 4e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 66414 ACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472
||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 606502 ACAGGATTCGAACCTGTGACCCACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTA 606444
>seq4222
Length=21366
Score = 91.5 bits (100), Expect = 2e-13
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 66410 CCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 66469
||| ||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||
Sbjct 17817 CCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAACTGAG 17758
Query 66470 CTA 66472
|||
Sbjct 17757 CTA 17755
>seq1604
Length=351056
Score = 91.5 bits (100), Expect = 2e-13
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472
||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 255347 CAGGATTCGAACCTGAGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 255404
>seq3436
Length=2346199
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472
||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 1190968 CAGGATTCGAACCTGCGACCCACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTA 1190911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521953396499520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |