Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq179 100 3e-16 seq1752 95.1 1e-14 seq3213 93.3 4e-14 seq1094 93.3 4e-14 seq4222 91.5 2e-13 seq1604 91.5 2e-13 seq3436 87.8 2e-12 >seq179 Length=2312354 Score = 100 bits (110), Expect = 3e-16 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 786897 CAGGATTCGAACCTGAGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 786954 >seq1752 Length=186427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAAG 66474 ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| | Sbjct 14639 CAGGATTCGAACCTGAGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTACG 14698 Query 66475 AG 66476 || Sbjct 14699 AG 14700 >seq3213 Length=2170589 Score = 93.3 bits (102), Expect = 4e-14 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 66407 ACACCCT--ACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAG 66464 ||||||| ||| ||||||||| |||||||||| ||||||||||| |||||||||||||| Sbjct 2104430 ACACCCTGGACAAGATTCGAACTTGTGACCTACCGCTTAGAAGGCGGTTGCTCTATCCAG 2104489 Query 66465 CTGAGCTA 66472 |||||||| Sbjct 2104490 CTGAGCTA 2104497 >seq1094 Length=2708314 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 52777 ACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCT 52836 |||||||| || |||||||||||||||| ||| |||||||| || | |||||||| Sbjct 382177 ACAGCATATCCTGAAACACGGATAGTCAGCTGAGGGTATTTCTCTGGATGCTCCATCGCA 382236 Query 52837 TCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTG 52880 || |||||||||||| |||| ||| || || |||||||| || Sbjct 382237 TCTTCCAACATTTCACGGTTCAGTACATTTACATTCAGGTGGTG 382280 Score = 93.3 bits (102), Expect = 4e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 66414 ACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 606502 ACAGGATTCGAACCTGTGACCCACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTA 606444 >seq4222 Length=21366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 66410 CCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAG 66469 ||| ||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||| Sbjct 17817 CCCGACAGGATTCGAACCTGTGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAACTGAG 17758 Query 66470 CTA 66472 ||| Sbjct 17757 CTA 17755 >seq1604 Length=351056 Score = 91.5 bits (100), Expect = 2e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| Sbjct 255347 CAGGATTCGAACCTGAGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 255404 >seq3436 Length=2346199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 66415 CAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTA 66472 ||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||| Sbjct 1190968 CAGGATTCGAACCTGCGACCCACGCCTTAGAAGGGCGTTGCTCTATCCAGCTGAGCTA 1190911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521953396499520