Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq714 107 3e-18 seq211 105 9e-18 >seq714 Length=734366 Score = 107 bits (118), Expect = 3e-18 Identities = 162/227 (71%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || ||| |||||||| || || | || ||||| ||||| | ||| || Sbjct 43904 TCATCCCTTGAAATCAATTCGTTGCTGAAAGTCAATCCTGGCATAAGTCCTCTTTTCTTC 43963 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAA-AAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || |||| || |||| ||| | | ||||| || || || || || |||||||| Sbjct 43964 AGCCAGAAAATTGAAGC-AAAGCTCCCGGAGAAGAAAATACCCTCCACTGCAGCAAATGC 44022 Query 48284 GGTAAGTCTCTCTCCGTAACTGGCT---TCGTTGTGTATCCACCGTTGTGCCCAATCAGC 48340 | |||||| || || | || || || |||||| | | |||||||| || Sbjct 44023 TACCACTCTCTCGCCATATGTTGCAGTATCATTTGCAATCCACTGAAGGGCCCAATCTGC 44082 Query 48341 CTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 ||||| |||||||| ||||||||||| ||||||||||| | | ||| Sbjct 44083 TTTCTTTTTTACACACGGCATTGTTTCAATAGCATTAAATAAATAGT 44129 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||||| |||||||||||| |||||||| ||||| || || |||||||| ||||| | | Sbjct 55186 TTTGATAAATCTACTTCTTCTGCTGTCCAGAATGAGGCTTCAGCTTTTTTGTACATTTGC 55245 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 || ||||| || || || || ||||| |||||||| ||||||| Sbjct 55246 CAAATATCTTGATACTGAATAGGAAAAATCACAAATCTTCTTGGATT 55292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 |||||| || || |||| || || | |||| | | || ||||| || || | | Sbjct 42116 TCTATCAGCTACAAATTGAATGTACTGTCTCATAAGGTTGCAGTTCATACCAATCATATC 42175 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || || | ||| || ||||||||||||||||| ||||| ||||||||| || || Sbjct 42176 TACCGGCAAAGCTTCAGTAAGAAACTCTTGTTCAATAGTTACAGCATCCTTAATAATTTC 42235 Query 48092 TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 | | || |||||| | ||| | | |||||| || ||||| | |||||||||||| Sbjct 42236 TTTCACTTCATCCTCAGTCGGTTTTTGAACCAAATGCTTGAACATGAGACATGCAAAATC 42295 Query 48152 ACAATGAAGACC 48163 |||||| ||||| Sbjct 42296 ACAATGCAGACC 42307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---AGACATAACTCCCATTTT 47851 |||||| ||| |||| || | ||| ||| ||||||| || ||| || || ||| Sbjct 38268 TTAAAAATCAGCATCCAATGTGAAAACATTTTCTTCTTTCTTAGCCATCACACCACATTT 38327 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || |||||||| ||||| || ||||||||||||||||| | ||| Sbjct 38328 CTGATACTCTCCAACTTTCTTCTCGAAGAAATTCGTCTTGCCTTCCAATGATATGTGTTC 38387 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAA 47943 ||| || || || ||||| ||| | ||||| Sbjct 38388 CATGAAGTCGAACGGATTTTCTGAGTAATAAA 38419 >seq211 Length=1809889 Score = 105 bits (116), Expect = 9e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || |||||| ||||| || || ||||| || | ||| ||||| || || | Sbjct 905023 CACCACTGAAGGTTTTTTTAGTTTCTTTATGAAGATTGGAAATAGCAATTCTAGCTGCAA 904964 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 ||||||||||||| ||||| | ||| || || || ||| |||| || |||| | ||| Sbjct 904963 GAATAGCATAATCTGGATGCTTTGTTGTCATCGTAGCAGCTGTTTCAGCAGCTAGATTAT 904904 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATT 78914 | || || | |||||| || ||| |||||| || | |||||||||| |||| Sbjct 904903 CCAATTCAACAGTTGTTACTCCAGCATATAGGCCGCTGACCACTTTCATGGTGATT 904848 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| |||| ||||| | | ||| || || | || ||||| || | |||| Sbjct 922619 TGAAATTCTCCGGACAGAACTCTTCTTGAGTAGATGTTCGTTGTGTATGGCTCAAAAGAT 922560 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 |||||||||||||| ||||||||||| ||||| || ||||| || || Sbjct 922559 TCATTGTTTCCCAATATTTGAGCAGTGGAAGCCGTAGGCATGGGAGC 922513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694453522138880