Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq2441 156 6e-33 seq373 132 7e-26 seq126 114 2e-20 seq2282 105 1e-17 seq2298 91.5 2e-13 >seq2441 Length=2995558 Score = 156 bits (172), Expect = 6e-33 Identities = 222/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 99467 CATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGA 99526 |||||||||||||||||| ||| | || || |||| |||||||| |||| || Sbjct 2867187 CATGAAACAATATTTGGATTTACTAGATAGAGTACTAAAAGAAGGCGTACACAAAGAAGA 2867128 Query 99527 CCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGA 99586 |||||| ||||| || || | | || || || || ||||||||| | | || Sbjct 2867127 CCGTACAGGCACAGGAACAATCAGCGTATTCGGACACCAGATGCGTTTTGACCTTAACGA 2867068 Query 99587 AGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645 ||||| || | ||||| ||| ||| |||||| || |||||||||||||| | Sbjct 2867067 TGGTTTCCCATGCCTGACTACCAAGAAGCT-TCACCTGAAATCCATTATTCATGAACTTC 2867009 Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705 | ||||| ||||||| ||||| ||| ||||||| |||| ||||| || ||||| Sbjct 2867008 TATGGTTTTTGAAAGGTGATACAAATGTTAAGTACCTCCAAGACAACGGAGTACGTATCT 2866949 Query 99706 GGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGGT 99765 ||||||| |||| | |||||||||| || ||||| | || || ||| | || ||||| | Sbjct 2866948 GGAATGAATGGGCAGACGAGAACGGAGAATTAGGTCACGTTTATGGATACCAATGGCGTT 2866889 Query 99766 CTTGGCCCGA 99775 | ||||| || Sbjct 2866888 CCTGGCCTGA 2866879 Score = 104 bits (114), Expect = 3e-17 Identities = 210/309 (68%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 99468 ATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGGCGAC 99527 ||||||||||| | || ||| | | ||||||||| ||||| | ||| || Sbjct 2670490 ATGAAACAATACCTAGATTTATTAGACAGGGTTTTAAAAGAAGGAACTCCCAAACAGGAT 2670431 Query 99528 CGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAA 99587 ||||| || || || || | | | ||||| ||||||||| | |||||| ||| || Sbjct 2670430 CGTACCGGAACAGGCACAATCAGTGTTTTTGGACATCAAATGAGATTTAATCTGGAAGAT 2670371 Query 99588 GGTTTTCCTCTGG-TCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCT 99646 |||||||| ||| | ||||| || ||| | || || || || ||||| | Sbjct 2670370 GGTTTTCC-CTGCCTTACTACCAAAAAACTTCATTTAAAGTCCATCATCCACGAACTTTT 2670312 Query 99647 TTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTG 99706 |||||||| ||||| ||||| ||| | ||||| |||| ||||| || |||||| Sbjct 2670311 GTGGTTCCTTAAAGGTGATACAAATGTAAAATACCTACAAGAGAACGGGGTTCGTATCTG 2670252 Query 99707 GAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGGTC 99766 |||||| |||| | || ||||| || || || | || || || | || ||||| || Sbjct 2670251 GAATGAATGGGCGGATGAAAACGGAGATTTGGGTCATGTCTATGGTTATCAATGGCGTTC 2670192 Query 99767 TTGGCCCGA 99775 ||||| || Sbjct 2670191 CTGGCCTGA 2670183 >seq373 Length=1274844 Score = 132 bits (146), Expect = 7e-26 Identities = 221/318 (69%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 99455 TTAAGGTTTTAGCATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGT 99514 |||||||| | |||||||||||| | || |||||| || | ||| || | || || Sbjct 928960 TTAAGGTTAATG-ATGAAACAATATCTTGATTTAATGCGTCATGTTCGGGATAACGGAGT 929018 Query 99515 TGTTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTT 99574 |||| | || ||||| || || ||||| | | | ||||| |||||||||| || Sbjct 929019 ATTTAAGGAAGATCGTACAGGAACGGGTACTTATAGTGTATTTGGTTATCAAATGCGCTT 929078 Query 99575 TAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTAT 99634 |||| | || || || ||||| | || || ||||| || || || || ||||| Sbjct 929079 TAATCTAGCGGATGGGTTTCCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTAT 929138 Query 99635 TCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGG 99694 ||||| | | ||||| || | || |||||||||| | ||||| ||||| || || Sbjct 929139 CCATGAGTTATTGTGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGG 929198 Query 99695 CGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAA 99754 || | ||| ||| |||| |||| | || |||||||| ||||| || || || || | Sbjct 929199 TGTGAGTATTTGGGATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTA 929258 Query 99755 GCAGTGGCGGTCTTGGCC 99772 || ||||| || ||||| Sbjct 929259 TCAATGGCGTTCATGGCC 929276 >seq126 Length=3533043 Score = 114 bits (126), Expect = 2e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 99525 GACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCT 99584 ||||| || || || || || | | ||||||| ||||| ||||| |||||| |||| Sbjct 1886648 GACCGCACAGGAACGGGAACCCTAAGTGTGTTTGGTCATCAGATGCGATTTAATATGGCG 1886707 Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTC 99644 || || ||||| | | ||||| || | ||||| ||||| ||| ||||| | Sbjct 1886708 GATGGCTTTCCGGTTCTTACTACAAAAAAATTGCACCTAAAATCTATCATTTATGAATTG 1886767 Query 99645 CTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATC 99704 ||||||||| || | || |||| |||| | ||||| | ||| || | ||| ||| Sbjct 1886768 CTTTGGTTCTTGCAGGGAAATACTAATATAAAATACCTCACCGATCACAGTGTCCGGATC 1886827 Query 99705 TGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGG 99764 |||||||| |||| | || ||||| || ||||||||| | || ||| || ||||| Sbjct 1886828 TGGAATGAATGGGCCGATGAAAACGGGGATTTAGGACCGATTTATGGAGCCCAATGGCGA 1886887 Query 99765 TCTTGGCCCGA 99775 || ||||| || Sbjct 1886888 TCCTGGCCGGA 1886898 >seq2282 Length=143344 Score = 105 bits (116), Expect = 1e-17 Identities = 165/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 99529 GTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTGAAG 99588 |||| ||||| ||||| || ||||||| || || ||||| ||| |||| || ||| Sbjct 11887 GTACAGGCAC----ACGTT--CTGTGTTTGGTCAGCAGATGCGCTTTGATTTATCTAAAG 11834 Query 99589 GTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCCTTT 99648 |||| ||| | | || ||||| || || ||||||||||||||| | | Sbjct 11833 GTTTCCCTTTAATGACAACTAAAAAAATGCATCTGAAAAGTATTATTCATGAACTTTTAT 11774 Query 99649 GGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCTGGA 99708 |||| | ||||| ||||| |||| ||||||| ||||||| |||| | ||||||| Sbjct 11773 GGTTTATAAAAGGCGATACAAATATTAAGTACCTTCAAGATAATGGCGGTAGAATCTGGA 11714 Query 99709 ATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 |||| |||| | || || ||| | ||||| || || ||||| |||||||| Sbjct 11713 ATGAATGGGCTGATGAAAATGGTAATTTAGGTCCTGTTTACGGCTCTCAGTGGCG 11659 >seq2298 Length=83281 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 99517 TTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTA 99576 ||||| | |||||||| || || ||||| | | || || ||||||||||||||| Sbjct 73457 TTAAAAGTGACCGTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTA 73398 Query 99577 ATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAG-CGCTGTCACCTCCGTTCTATTATT 99635 |||||| || ||||| ||| | | || || ||| ||| || || || |||||| Sbjct 73397 ATTTGGAAGAGGGTTTCCCTGTTTTAACGACAAAGAAACTG-CATCTGAAATCGATTATT 73339 Query 99636 CATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGC 99695 |||| | || ||||| | || || |||||||||| | || || |||||| ||||| Sbjct 73338 TATGAGTTGCTATGGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGC 73279 Query 99696 GTCACTATCTGGAATGAGTGGG 99717 || | ||| ||| | || |||| Sbjct 73278 GTTAGTATTTGGGACGAATGGG 73257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734047648115520