Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq2797 116 1e-21 >seq2797 Length=50669 Score = 116 bits (128), Expect = 1e-21 Identities = 232/339 (68%), Gaps = 20/339 (6%) Strand=Plus/Plus Query 1160 ATTCCATGGTCTGAGCACAACACTGAAGCATTCGCCGGGCTGCACAACGAGCGCAAGCGC 1219 ||||| ||||| || |||||| | || || |||||||||||||| | ||| | Sbjct 33156 ATTCCGTGGTCGGAACACAACCCCGAGGCCTTCGCCGGGCTGCAT-----GGGCATGATG 33210 Query 1220 ATCATCGTGGTATTCGACGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTTGCCGAG 1279 || |||| || || || || || || |||| |||| | | |||||| ||||| Sbjct 33211 -TCCTCGTCGTTTTTGATGAGGCGTCGGCCATTCCCGACATCATCTGGGAGACGACCGAG 33269 Query 1280 GGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCGACGCGT 1339 || || |||| || | | || || ||| ||| |||||| |||||||| | Sbjct 33270 GGCGCCATGACCACTGACGGCGCC------ATGTGGATGGTGTTCGGCAACCCGACCAGG 33323 Query 1340 AACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGGAAGTGCGCG-CA 1398 || ||||| || || || ||||||||| |||||| ||| ||||||||||| | | || | Sbjct 33324 AATACCGGCCGCTTTCGGGAGTGCTTCGGCAAATTCCGCCATCGCTGGAA-TACCCGAAA 33382 Query 1399 GATTGACAGCCGCAC---CGTTGAGGGCACCAACAAAGAGCAACTGCAAAAGTGGGTGGA 1455 ||| || ||||| |||| || |||||| |||| | | ||||| ||| Sbjct 33383 GATCGATTCGCGCACATGCGTTATGG---TCAACAAGCAGCAGGTTGAGCAGTGGCTGGC 33439 Query 1456 CGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGT 1494 |||||||||||| ||| ||||| | |||||||| || Sbjct 33440 CGACTACGGCGAGGACTCGGACTTTTTCAAGGTGCGCGT 33478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133471093870688