Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq1991 158 2e-33 seq373 149 1e-30 seq2441 109 9e-19 seq179 104 4e-17 seq1948 102 1e-16 seq21293 89.7 8e-13 seq3099 89.7 8e-13 seq2321 89.7 8e-13 seq2298 89.7 8e-13 seq1601 89.7 8e-13 seq6689 87.8 3e-12 >seq1991 Length=147557 Score = 158 bits (174), Expect = 2e-33 Identities = 183/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| || || |||||||| || ||||||||| | ||||||||||||| || | | Sbjct 6613 CGACCGGACAGGAACGGGCACGATCAGTGTTTTCGGGCACCAGATGCGCTTTGACCTCAA 6554 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 || |||||||| | | ||||| ||||| | || || || || ||||| ||||| || Sbjct 6553 TGAGGGTTTTCCCGTACTGACCACAAAAAAACTGCATCTACGCTCGATCATACATGAACT 6494 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||| |||| ||| || ||||| || | ||| | | || || ||||| || || Sbjct 6493 TCTGTGGTTTCTCAAGGGAGATACCAATATAAAATATCTTCACGATAATAACGTTACGAT 6434 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||||| ||||||||| |||| || | |||||||| ||||| | || ||||| Sbjct 6433 ATGGGACGAGTGGGCGGATGCCGACGGCAACCTGGGCCCGGTCTACGGATACCAGTGGCG 6374 Query 202087 TAGCTGG 202093 || ||| Sbjct 6373 CAGTTGG 6367 >seq373 Length=1274844 Score = 149 bits (164), Expect = 1e-30 Identities = 211/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||||||||| || ||| ||||| ||||||| || ||||| | | || | || Sbjct 928972 ATGAAACAATATCTTGATTTAATGCGTCATGTTCGGGATAACGGAGTATTTAAGGAAGAT 929031 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 ||||| || ||||| || ||| || || || ||||||||||| || || Sbjct 929032 CGTACAGGAACGGGTACTTATAGTGTATTTGGTTATCAAATGCGCTTTAATCTAGCGGAT 929091 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || |||||| | || ||||| ||||| || ||| || || ||||||||| | || Sbjct 929092 GGGTTTCCGTTAGTTACCACTAAAAAATGCCATCTTAAGTCGATTATCCATGAGTTATTG 929151 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 ||||| | ||| || ||||| || | || | ||||| || || | || ||| Sbjct 929152 TGGTTTTTGCAGGGCGATACCAATATTCGTTACCTTAAAGAAAATGGTGTGAGTATTTGG 929211 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 || |||||||| ||| |||||||||| |||||||| ||||| ||| | ||||||||| Sbjct 929212 GATGAATGGGCTGATGAAAACGGTGATTTAGGCCCTGTGTATGGTTATCAATGGCGT 929268 >seq2441 Length=2995558 Score = 109 bits (120), Expect = 9e-19 Identities = 174/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 201848 GACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAA 201907 || |||||||| || ||||| || |||||| |||| || ||| | ||||| | || Sbjct 2670433 GATCGTACCGGAACAGGCACAATCAGTGTTTTTGGACATCAAATGAGATTTAATCTGGAA 2670374 Query 201908 GAAGGTTTTCCGCTGG-TCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 || |||||||| ||| | || |||||||| |||| | || |||||||| || || Sbjct 2670373 GATGGTTTTCC-CTGCCTTACTACCAAAAAACTTCATTTAAAGTCCATCATCCACGAACT 2670315 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||| | ||||| || || | | || | |||| ||| || || Sbjct 2670314 TTTGTGGTTCCTTAAAGGTGATACAAATGTAAAATACCTACAAGAGAACGGGGTTCGTAT 2670255 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||| | |||||||||||| ||||||| || || || | || || ||| | |||||||| Sbjct 2670254 CTGGAATGAATGGGCGGATGAAAACGGAGATTTGGGTCATGTCTATGGTTATCAATGGCG 2670195 Query 202087 TAGCTGG 202093 | |||| Sbjct 2670194 TTCCTGG 2670188 >seq179 Length=2312354 Score = 104 bits (114), Expect = 4e-17 Identities = 201/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 ||| ||||||||||||| ||| | |||| |||||||| ||||||| ||| Sbjct 182096 ATGCAACAATATCTGGATTTATTAAAACATGTAAAAGAAAACGGAACTGTAAAAAAAGAC 182155 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 ||||| || || || || | |||||||| ||||||| | |||||| | || ||| Sbjct 182156 CGTACAGGAACAGGAACGTCCAGCGTTTTCGGTTACCAGATGAGATTTAACCTTCAGGAA 182215 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || |||||| | || |||||||| |||| | ||||| || |||| | | Sbjct 182216 GGGTTTCCGTGTCTGACAACCAAAAAACTTCATTTAAAATCAATAATTTATGAATTATTA 182275 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 ||||| | | || || ||||| || | ||| | || || | || | || ||| Sbjct 182276 TGGTTTTTGAACGGAGATACCAATATAAAATATCTAAATGAACATGGAGTAAAAATATGG 182335 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 |||||||||| ||| ||||||| ||| | || | || ||||| | ||||||||| Sbjct 182336 AACGAATGGGCCGATGAAAACGGAGACCTCGGACATGTATACGGATATCAATGGCGT 182392 >seq1948 Length=475166 Score = 102 bits (112), Expect = 1e-16 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 |||| ||||| ||||| || || ||| ||| || || | ||||||||| |||||| Sbjct 215256 AAAGAAGACCGAACCGGAACCGGAACCTATAGTGTATTTGGTCACCAGATGCGGTTTAAC 215315 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 | ||||||| ||||| || | ||||||||||| | || ||| || || || | Sbjct 215316 ATGGAAGAAGGATTTCCTTTGCTTACCACCAAAAAATTACATCTTAAATCGATTATATAC 215375 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 ||||| |||||||| || | || ||||| ||| | |||||| |||| | || Sbjct 215376 GAGCTACTGTGGTTTCTGAAAGGAGACACGAACGCTAAATATTTGCAAGATCATGGTGTT 215435 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 |||||| |||||||||| ||| | || ||| | | || | | ||||| | ||| Sbjct 215436 CGTATCTGGAACGAATGGGCAGATGAGAATGGTAATCTTGGACATATTTACGGGTATCAA 215495 Query 202082 TGGCGT 202087 |||||| Sbjct 215496 TGGCGT 215501 >seq21293 Length=1177 Score = 89.7 bits (98), Expect = 8e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 ||| |||||||| |||||||||||| ||||||||||||| ||||||||| |||| |||| Sbjct 637 CTCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCC 578 Query 4090 ACTCGAGACAACCA 4103 ||| ||| | |||| Sbjct 577 ACTTGAGCCCACCA 564 >seq3099 Length=1637421 Score = 89.7 bits (98), Expect = 8e-13 Identities = 200/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAA-AACGGGGATGTAAAAGCCGA 201849 ||||||||||||| ||| || || ||| | ||| || | | |||||| || Sbjct 177097 ATGAAACAATATCACGACCTATTGAAACGTGTACTAGAAGAAGGTACACATAAAAG-TGA 177039 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 |||||| ||||| ||||| || ||| ||||||| |||| |||| ||| | || Sbjct 177038 CCGTACAGGTACAGGCACAATCAGTGTGTTCGGACATCAGAGCCGCTATAATCTGGCTGA 176979 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 || || || | | ||||| ||||| |||| ||| || ||||| ||||| |||| Sbjct 176978 GGGATTCCCTGTACTAACCACAAAAAAACTTCATCTTAAATCTATCATATATGAGTTGCT 176919 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||| | ||||| || || |||||||| ||||| | || ||| || Sbjct 176918 TTGGTTTTTAGCAGGTGATACAAATGCGAAGTATTTGCAAGACCATGGAGTACGCATTTG 176859 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 | |||||||||| ||| || | ||| |||| || | | || ||| | || |||||| Sbjct 176858 GAACGAATGGGCCGATGAAGATGGTAACTTGGGACATATTTATGGTTATCAGTGGCGT 176801 >seq2321 Length=120357 Score = 89.7 bits (98), Expect = 8e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 4033 GTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTACT 4092 ||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||| | Sbjct 110012 GTAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGAAGTTCAAGTCTTC- 109954 Query 4093 CGAGACAACCAGCATTAT 4110 | |||| ||| |||||| Sbjct 109953 CCAGAC--CCACCATTAT 109938 >seq2298 Length=83281 Score = 89.7 bits (98), Expect = 8e-13 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGA-TGTAAAAGCCG 201848 |||||||||||||| || | | || ||||| || ||||| | | |||||| | Sbjct 73507 CATGAAACAATATCAAGATCTTTTACGGCATGTTATGGATAACGGTAACTTTAAAAGT-G 73449 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 ||||||| || ||||| || ||| |||||| || ||||| ||||| || ||| Sbjct 73448 ACCGTACGGGAACGGGTACAAAAAGTGTATTCGGATATCAAATGCGTTTTAATTTGGAAG 73389 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 | ||||| || | | || || || || | || || || || || ||||| ||| Sbjct 73388 AGGGTTTCCCTGTTTTAACGACAAAGAAACTGCATCTGAAATCGATTATTTATGAGTTGC 73329 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 | ||||| | | |||||| ||||| || | ||| | ||||| || ||| | || | Sbjct 73328 TATGGTTTTTAAAGGGTGATACCAATATTAAATATCTAAAAGATCACGGCGTTAGTATTT 73269 Query 202029 GGGACGAATGGGC 202041 ||||||||||||| Sbjct 73268 GGGACGAATGGGC 73256 >seq1601 Length=193913 Score = 89.7 bits (98), Expect = 8e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 ||| |||||||| |||||||||||| ||||||||||||| ||||||||| |||| |||| Sbjct 147000 CTCATAGCTCAGGTGGTTAGAGCGCGCGCCTGATAAGCGCGAGGTCGGTGGTTCGAGTCC 147059 Query 4090 ACTCGAGACAACCA 4103 ||| ||| | |||| Sbjct 147060 ACTTGAGCCCACCA 147073 >seq6689 Length=8825 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 4033 GTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTA 4090 ||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 4193 GTAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGATAGTTCAAGTCTA 4136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787758997808320