Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq1991 93.3 7e-14 seq21293 89.7 8e-13 seq1601 89.7 8e-13 >seq1991 Length=147557 Score = 93.3 bits (102), Expect = 7e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 200126 TTTTCGGTGCAC-AGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAG 200184 ||||||| |||| |||||||||| | || | || || || || | |||| || || Sbjct 6584 TTTTCGG-GCACCAGATGCGCTTTGACCTCAATGAGGGTTTTCCCGTACTGACCACAAAA 6526 Query 200185 AAGTGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAAT 200244 || ||||| || || ||||| || || || ||||||| || || || || |||||| Sbjct 6525 AAACTGCATCTACGCTCGATCATACATGAACTTCTGTGGTTTCTCAAGGGAGATACCAAT 6466 Query 200245 ATCAAGTATCTGAACGATAACAATGTCACCATTTGGGACGAATGGGCG 200292 || || ||||| ||||||| || || || || |||||||| |||||| Sbjct 6465 ATAAAATATCTTCACGATAATAACGTTACGATATGGGACGAGTGGGCG 6418 >seq21293 Length=1177 Score = 89.7 bits (98), Expect = 8e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 3214 CTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCC 3273 ||| |||||||| |||| ||||||| ||||||||||||| |||||| ||||||| ||||| Sbjct 637 CTCATAGCTCAGGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCC 578 Query 3274 ACTCGAGACAACCA 3287 ||| ||| | |||| Sbjct 577 ACTTGAGCCCACCA 564 >seq1601 Length=193913 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 3214 CTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCC 3273 ||| |||||||| |||| ||||||| ||||||||||||| |||||| ||||||| ||||| Sbjct 147000 CTCATAGCTCAGGTGGTTAGAGCGCGCGCCTGATAAGCGCGAGGTCGGTGGTTCGAGTCC 147059 Query 3274 ACTCGAGACAACCAATT 3290 ||| ||| | |||| || Sbjct 147060 ACTTGAGCCCACCACTT 147076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783117236736000