Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq2441 114 2e-20 seq1780 107 3e-18 seq1948 100 4e-16 >seq2441 Length=2995558 Score = 114 bits (126), Expect = 2e-20 Identities = 207/303 (68%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCTGAC 196073 |||||||| |||||||| || | | | || | || ||||| | |||| ||| Sbjct 2867186 ATGAAACAATATTTGGATTTACTAGATAGAGTACTAAAAGAAGGCGTACACAAAGAAGAC 2867127 Query 196074 CGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAA 196133 ||||| ||||| || || ||| | ||||| | ||||||||||||||||| | | Sbjct 2867126 CGTACAGGCACAGGAACAATCAGCGTATTCGGACACCAGATGCGTTTTGACCTTAACGAT 2867067 Query 196134 GGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTG 196193 || ||||| | || ||||| ||| | |||||| ||| || || || ||||| | Sbjct 2867066 GGTTTCCCATGCCTGACTACCAAGAAGCTTCACCTGAAATCCATTATTCATGAACTTCTA 2867007 Query 196194 TGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGG 196253 ||||| |||| || || || || | |||| || |||||||| || |||||||| Sbjct 2867006 TGGTTTTTGAAAGGTGATACAAATGTTAAGTACCTCCAAGACAACGGAGTACGTATCTGG 2866947 Query 196254 GATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGTGCA 196313 |||| |||||||| || | || || | || | ||| || || | || |||||| | Sbjct 2866946 AATGAATGGGCAGACGAGAACGGAGAATTAGGTCACGTTTATGGATACCAATGGCGTTCC 2866887 Query 196314 TGG 196316 ||| Sbjct 2866886 TGG 2866884 Score = 109 bits (120), Expect = 8e-19 Identities = 174/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || |||||||| || ||||| ||| | |||| || |||| ||| | ||| | ||| | Sbjct 2670433 GATCGTACCGGAACAGGCACAATCAGTGTTTTTGGACATCAAATGAGATTTAATCTG-GA 2670375 Query 196131 AAAGGGTTCCCGCTGG-TCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | | |||| | ||| | || |||||||| | || | || |||||||||||||| Sbjct 2670374 AGATGGTTTTCCCTGCCTTACTACCAAAAAACTTCATTTAAAGTCCATCATCCACGAACT 2670315 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 ||||||||||| || || || || || | | || || |||| ||| || |||| Sbjct 2670314 TTTGTGGTTCCTTAAAGGTGATACAAATGTAAAATACCTACAAGAGAACGGGGTTCGTAT 2670255 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||| |||| ||||| |||||| | || ||| | || | ||||| ||| | || ||||| Sbjct 2670254 CTGGAATGAATGGGCGGATGAAAACGGAGATTTGGGTCATGTCTATGGTTATCAATGGCG 2670195 Query 196310 TGCATGG 196316 | | ||| Sbjct 2670194 TTCCTGG 2670188 >seq1780 Length=289896 Score = 107 bits (118), Expect = 3e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 196020 CAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCTGACCGTACC 196079 || |||||||| || |||| || || | ||||| ||||| | ||| | || Sbjct 289766 CAATATTTGGATTTAGTGCAACATGTTCTGGATAAAGGTGTAGAGAAGGAAGACAGAACG 289707 Query 196080 GGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAAGGGTTC 196139 || ||||| || | | |||| || ||||||||||| ||||| ||| ||||||| Sbjct 289706 GGAACGGGAACAAAGAGTGTTTTTGGTTATCAGATGCGATTTGATATGCAGGAAGGGTTT 289647 Query 196140 CCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTGTGGTTC 196199 ||| || | || |||||||| |||||| || ||||||||| ||||| || ||||| Sbjct 289646 CCGTTGATTACTACCAAAAAATTGCACTTGAAATCTATCATATTTGAACTTTTATGGTTT 289587 Query 196200 CTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGGATGAG 196259 ||| || ||||| || | | ||||| | ||| | || |||||||| |||| Sbjct 289586 TTGATGGGTGACACGAATGTAAAATATCTTCAGGACCATGGTGTACGTATCTGGAATGAA 289527 Query 196260 TGGGCAGATGAAGATGG 196276 |||||| |||||||| Sbjct 289526 TGGGCAAGAGAAGATGG 289510 >seq1948 Length=475166 Score = 100 bits (110), Expect = 4e-16 Identities = 178/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 196063 AGAAAGCTGACCGTACCGGCACGGGCACC-ATC-TCTATTTTCGGGTATCAGATGCGTTT 196120 |||||| ||||| ||||| || || ||| || | ||||| || | |||||||| || Sbjct 215254 AGAAAGAAGACCGAACCGGAACCGGAACCTATAGTGTATTT--GGTCACCAGATGCGGTT 215311 Query 196121 TGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCAT 196180 | || || |||| || || || | ||||||||||| || || || ||| || || Sbjct 215312 TAACATGGAAGAAGGATTTCCTTTGCTTACCACCAAAAAATTACATCTTAAATCGATTAT 215371 Query 196181 CCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAA 196240 |||| || ||||||| ||||| || ||||| ||| | ||| || |||| | Sbjct 215372 ATACGAGCTACTGTGGTTTCTGAAAGGAGACACGAACGCTAAATATTTGCAAGATCATGG 215431 Query 196241 CGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAA 196300 || |||||||| | || ||||||||||| |||| ||||||| | | ||||| | Sbjct 215432 TGTTCGTATCTGGAACGAATGGGCAGATGAGAATGGTAATCTTGGACATATTTACGGGTA 215491 Query 196301 GCAGTGGCGTGCATGG 196316 || |||||| | ||| Sbjct 215492 TCAATGGCGTTCGTGG 215507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770068481798720