Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq2441 93.3 2e-14 seq1948 87.8 7e-13 >seq2441 Length=2995558 Score = 93.3 bits (102), Expect = 2e-14 Identities = 242/362 (67%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 51868 TGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTT 51927 ||||||| ||| || ||| || || || | || || || |||| || | || | Sbjct 2670312 TGTGGTTCCTTAAAGGTGATACAAATGTAAAATACCTACAAGAGAACGGGGTTCGTATCT 2670253 Query 51928 GGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTA 51987 || | ||||||||||||||||| || | |||||| ||| |||||| | || |||||| Sbjct 2670252 GGAATGAATGGGCGGATGAAAACGGAGATTTGGGTCATGTCTATGGTTATCAATGGCGTT 2670193 Query 51988 GTTGGGATGCTGGTGGCGGCAAGGTC--ATCGATCAGATCCATGAAGTCGTCAAATCAAT 52045 ||| || | | | | ||| | || || |||||| || || || || |||| Sbjct 2670192 CCTGGCCTGAT--TATCAGGGAGGACATATAGACCAGATCACAGAGGTGGTGAATACAAT 2670135 Query 52046 TAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGA 52105 ||||| |||| ||| ||||| | ||| || |||||||| | ||| || | Sbjct 2670134 AAAGAATAATCCGGATTCCCGACGTATGTTAGTCAGCGCATGGAATGTAGCGGATCTGAA 2670075 Query 52106 TGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCT 52165 | | ||| | | |||||||||| | || || || |||||||| ||||||||| | Sbjct 2670074 TAACATGAACCTCCCCCCCTGCCATATTTTCTTTCAGTTTTATGTAGCCGAAGGTAAGTT 2670015 Query 52166 -TTCGTGCCATTTGTATCAGCGGTCTGCCGACA-TGTTCTTGGGCGTTCCGTTTAACATT 52223 | ||| | || ||||| || || || | | |||||||| || ||||| || ||| Sbjct 2670014 AAGCCTGCAACTT-TATCAACGTAGCGCAGATATTTTTCTTGGG-GTACCGTTCAATATT 2669957 Query 52224 GC 52225 || Sbjct 2669956 GC 2669955 >seq1948 Length=475166 Score = 87.8 bits (96), Expect = 7e-13 Identities = 206/309 (67%), Gaps = 14/309 (5%) Strand=Plus/Plus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||| |||||||||| ||||| |||||||| || || | | | || || | || ||| Sbjct 215439 ATCTGGAACGAATGGGCAGATGAGAATGGTAATCTTGGACATATTTACGGGTATCAATGG 215498 Query 51984 CGTAGTTGGGATGCTGGTGGCGGCAAGGT--CATCGATCAGATCCATGAAGTCGTCAAAT 52041 ||| ||| | | | || |||| ||| |||||||| ||||| || || Sbjct 215499 CGTTCGTGGCCCGATTATAAAGG--AGGTTCCATTGATCAGATAAGTGAAGCTGTTAATA 215556 Query 52042 CAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATT 52101 || ||||| |||| ||| ||| | ||| || |||||||||||||||||| Sbjct 215557 TGATCAAGAATAATCCGGATTCTCGCAGAATCATAGTAAGTGCTTGGAATGTGGGTGACC 215616 Query 52102 TGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG-- 52159 |||| | ||| || |||| || ||| | | |||||||||||||| || | || Sbjct 215617 TGGAAAACATGAATTTACCTCCATGTCATGCTTTTTTCCAATTCTATGTGGCAAATGGAC 215676 Query 52160 ---TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTT 52216 ||||||| || || ||||| || ||| || || || |||| || || || Sbjct 215677 GATTAAGCTT-----ACAATTATATCAACGCAGTGCTGATATATTTCTGGGAGTGCCATT 215731 Query 52217 TAACATTGC 52225 |||||| || Sbjct 215732 TAACATAGC 215740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190040034787120