Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1690 107 2e-18 seq3213 102 9e-17 seq1604 95.1 1e-14 seq4222 93.3 5e-14 seq1752 89.7 6e-13 seq5996 87.8 2e-12 seq3885 87.8 2e-12 seq1094 87.8 2e-12 seq179 84.2 2e-11 >seq1690 Length=1574822 Score = 107 bits (118), Expect = 2e-18 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 18247 CAGGGGGATT-AGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCG 18305 || ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1439859 CATGGGGATTTAGCTCAGTTGGTAGAGCACCTGCCTTGCAAGCAGGATGTCAGGAGTTCG 1439800 Query 18306 AGTCTCCTATTCTCCA 18321 | ||||||| |||||| Sbjct 1439799 ACTCTCCTAATCTCCA 1439784 >seq3213 Length=2170589 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 18246 CCAGGGGGATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCG 18305 || |||||||||||||| |||||||||||||||||||||| ||||| || ||||||||| Sbjct 229443 CCTGGGGGATTAGCTCATTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTGAGGAGTTCG 229502 Query 18306 AGTCTCCTATTCTCCA 18321 | |||||||| ||||| Sbjct 229503 ATTCTCCTATCCTCCA 229518 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 17904 GGTGGCGGAATCGGTAGACGCATCGGACTTAAAATCCGCTGAGGATTAACCCTCGTGAGA 17963 ||||||||||||||||||||| |||||||||||||||| | ||| |||| ||| ||| | Sbjct 1353520 GGTGGCGGAATCGGTAGACGCGTCGGACTTAAAATCCGATTAGGGTTAAACCTAGTGCCA 1353461 Query 17964 GTTCAAGTCT 17973 |||||||||| Sbjct 1353460 GTTCAAGTCT 1353451 >seq1604 Length=351056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 159827 CAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCT 159886 ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 159887 GTCTG 159891 | ||| Sbjct 255347 GACTG 255343 >seq4222 Length=21366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 159829 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888 ||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 17754 GTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 17813 Query 159889 C 159889 | Sbjct 17814 C 17814 >seq1752 Length=186427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 159829 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 159887 ||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||| Sbjct 14697 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 14639 >seq5996 Length=10664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 18249 GGGGGATTAGCTCAGTTGG--TAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGA 18306 ||||||||||||||||||| |||||||||||| ||||| ||||| |||| | |||||| Sbjct 3265 GGGGGATTAGCTCAGTTGGCTTAGAGCACCTGCCTTGCACGCAGGGGGTCAAGGGTTCGA 3324 Query 18307 GTCTCCTATTCTCCA 18321 ||| | ||||||||| Sbjct 3325 GTCCCTTATTCTCCA 3339 >seq3885 Length=21154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 18249 GGGGGATTAGCTCAGTTGG--TAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGA 18306 ||||||||||||||||||| |||||||||||| ||||| ||||| |||| | |||||| Sbjct 3944 GGGGGATTAGCTCAGTTGGCTTAGAGCACCTGCCTTGCACGCAGGGGGTCAAGGGTTCGA 4003 Query 18307 GTCTCCTATTCTCCA 18321 ||| | ||||||||| Sbjct 4004 GTCCCTTATTCTCCA 4018 >seq1094 Length=2708314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 159821 ATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 159880 |||| ||||||||||| ||||||||||||| ||||||||| || ||||||||||||| Sbjct 606435 ATGGTCCAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTGGGTCACAGGTTCG 606494 Query 159881 AGTCCTGTCTG 159891 | ||||||||| Sbjct 606495 AATCCTGTCTG 606505 >seq179 Length=2312354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 159824 GGTC-AGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAG 159882 |||| |||||||||| ||||||||||||| ||||||||||| || |||| ||||||||| Sbjct 786961 GGTCTAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCTCAGGTTCGAA 786902 Query 159883 TCCTGTCT 159890 ||||| || Sbjct 786901 TCCTGACT 786894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557481582901440