Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02]
24,792 sequences; 2,037,201,033 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq1690 107 2e-18
seq3213 102 9e-17
seq1604 95.1 1e-14
seq4222 93.3 5e-14
seq1752 89.7 6e-13
seq5996 87.8 2e-12
seq3885 87.8 2e-12
seq1094 87.8 2e-12
seq179 84.2 2e-11
>seq1690
Length=1574822
Score = 107 bits (118), Expect = 2e-18
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 18247 CAGGGGGATT-AGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCG 18305
|| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1439859 CATGGGGATTTAGCTCAGTTGGTAGAGCACCTGCCTTGCAAGCAGGATGTCAGGAGTTCG 1439800
Query 18306 AGTCTCCTATTCTCCA 18321
| ||||||| ||||||
Sbjct 1439799 ACTCTCCTAATCTCCA 1439784
>seq3213
Length=2170589
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 18246 CCAGGGGGATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCG 18305
|| |||||||||||||| |||||||||||||||||||||| ||||| || |||||||||
Sbjct 229443 CCTGGGGGATTAGCTCATTTGGTAGAGCACCTGCTTTGCACGCAGGGGGTGAGGAGTTCG 229502
Query 18306 AGTCTCCTATTCTCCA 18321
| |||||||| |||||
Sbjct 229503 ATTCTCCTATCCTCCA 229518
Score = 91.5 bits (100), Expect = 2e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 17904 GGTGGCGGAATCGGTAGACGCATCGGACTTAAAATCCGCTGAGGATTAACCCTCGTGAGA 17963
||||||||||||||||||||| |||||||||||||||| | ||| |||| ||| ||| |
Sbjct 1353520 GGTGGCGGAATCGGTAGACGCGTCGGACTTAAAATCCGATTAGGGTTAAACCTAGTGCCA 1353461
Query 17964 GTTCAAGTCT 17973
||||||||||
Sbjct 1353460 GTTCAAGTCT 1353451
>seq1604
Length=351056
Score = 95.1 bits (104), Expect = 1e-14
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 159827 CAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCT 159886
||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348
Query 159887 GTCTG 159891
| |||
Sbjct 255347 GACTG 255343
>seq4222
Length=21366
Score = 93.3 bits (102), Expect = 5e-14
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 159829 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888
||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 17754 GTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCACAGGTTCGAATCCTGT 17813
Query 159889 C 159889
|
Sbjct 17814 C 17814
>seq1752
Length=186427
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 159829 GTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTG 159887
||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 14697 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCTG 14639
>seq5996
Length=10664
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 18249 GGGGGATTAGCTCAGTTGG--TAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGA 18306
||||||||||||||||||| |||||||||||| ||||| ||||| |||| | ||||||
Sbjct 3265 GGGGGATTAGCTCAGTTGGCTTAGAGCACCTGCCTTGCACGCAGGGGGTCAAGGGTTCGA 3324
Query 18307 GTCTCCTATTCTCCA 18321
||| | |||||||||
Sbjct 3325 GTCCCTTATTCTCCA 3339
>seq3885
Length=21154
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 18249 GGGGGATTAGCTCAGTTGG--TAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGA 18306
||||||||||||||||||| |||||||||||| ||||| ||||| |||| | ||||||
Sbjct 3944 GGGGGATTAGCTCAGTTGGCTTAGAGCACCTGCCTTGCACGCAGGGGGTCAAGGGTTCGA 4003
Query 18307 GTCTCCTATTCTCCA 18321
||| | |||||||||
Sbjct 4004 GTCCCTTATTCTCCA 4018
>seq1094
Length=2708314
Score = 87.8 bits (96), Expect = 2e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 159821 ATGGGTCAGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCG 159880
|||| ||||||||||| ||||||||||||| ||||||||| || |||||||||||||
Sbjct 606435 ATGGTCCAGTAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTGGGTCACAGGTTCG 606494
Query 159881 AGTCCTGTCTG 159891
| |||||||||
Sbjct 606495 AATCCTGTCTG 606505
>seq179
Length=2312354
Score = 84.2 bits (92), Expect = 2e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand=Plus/Minus
Query 159824 GGTC-AGTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAG 159882
|||| |||||||||| ||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 786961 GGTCTAGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCTCAGGTTCGAA 786902
Query 159883 TCCTGTCT 159890
||||| ||
Sbjct 786901 TCCTGACT 786894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557481582901440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |