Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq373 140 2e-28 seq126 87.8 1e-12 >seq373 Length=1274844 Score = 140 bits (154), Expect = 2e-28 Identities = 220/307 (72%), Gaps = 6/307 (2%) Strand=Plus/Plus Query 70266 GTGAGGGTATTGATCAGATCGAGT-GGGTAATTAATGAGATTAAAACTAATCCAAATAGC 70324 ||||| ||||||||||||| ||| | | || | |||||| |||||||| || Sbjct 929288 GTGAGCATATTGATCAGATC-AGTAAGTTGATCGAAATGATTAACACTAATCCTGATTCG 929346 Query 70325 CGTCGTATGATTGTCACGGGGTGGAACCCT-CATGAGATTGAAGATGTAGACCTTCCACC 70383 || ||| |||||||| | | ||||||||| ||| || | || || | | || ||||| Sbjct 929347 CGGCGTTTGATTGTCTCAGCTTGGAACCCTGCATTAG-TAGATGAAATGGCACTACCACC 929405 Query 70384 ATGTCATACACTATTCCAATTCTTTGTGGAAGATGGTAAGCTTTCTTGCCAGCTATATCA 70443 || ||| | |||||||||| | ||||| |||||| || || || || ||| ||||||| Sbjct 929406 TTGCCATGCCTTATTCCAATTTTATGTGGCAGATGGAAAACTATCATGTCAGTTATATCA 929465 Query 70444 ACGTAGTGCTGACATTTTACTTGGTGTGCCATTCAATATTGCATCATATGCCTTACTTAC 70503 ||| ||||| ||||| |||||||| || || |||||||| ||||| ||| | || Sbjct 929466 GCGTTCAGCTGATATTTTCCTTGGTGTTCCCTTTAATATTGCTAGTTATGCATTATTGAC 929525 Query 70504 ACATCTTATTGCTGC-TGAGTGTGGGTTAGGTGTTGGTGAGTTTGTTTGGACTGGTGGTG 70562 || | || || | ||| ||||| | ||||| ||| ||||||| ||||||| Sbjct 929526 -GATGATGGTGGCGCAAGTTTGTAATTTAGGGTTAGGTGATTTTATTTGGACGGGTGGTG 929584 Query 70563 ATATCCA 70569 ||| ||| Sbjct 929585 ATAGCCA 929591 >seq126 Length=3533043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 70296 TTAATGAGATTAAAACTAATCCAAATAGCCGTCGTATGATTGTCACGGGGTGGAACCCTC 70355 ||||| || |||| |||||| || || ||||| ||||||| | |||||| | Sbjct 1886937 TTAATACAATAAAAAATAATCCGGATTCTCGGCGTATCATTGTCAGTGCATGGAACGTTG 1886996 Query 70356 ATGAGATTGAAGATGTAGACCTTCCACCATGTCATACACTATTCCAATTCTTTGTGGAAG 70415 || ||| || | | || || || |||||| | |||||||||| ||||| | Sbjct 1886997 CCGATATTCCCAATATGAAACTCCCTCCCTGTCATTGTTTCTTCCAATTCTATGTGGCAA 1887056 Query 70416 ATGGTAAGCTTTCTTGCCAGCTATATCAACGTAGTGCTGACATTTTACTTGGTGTGCCAT 70475 | || || || ||| || || ||||||||||| || || || || ||||| || || | Sbjct 1887057 ACGGAAAACTATCTCTGCAACTTTATCAACGTAGCGCCGATATATTTCTTGGAGTTCCTT 1887116 Query 70476 TCAATATTGCATCATATGCCTTA 70498 | ||||| ||||| ||||| ||| Sbjct 1887117 TTAATATAGCATCGTATGCTTTA 1887139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335473005356104