Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3496 98.7 1e-15 seq1991 98.7 1e-15 seq1604 95.1 1e-14 seq3436 93.3 5e-14 seq1752 93.3 5e-14 seq1690 91.5 2e-13 seq19236 87.8 2e-12 seq385 87.8 2e-12 seq179 84.2 3e-11 seq3099 82.4 9e-11 seq2951 82.4 9e-11 seq1702 82.4 9e-11 seq788 82.4 9e-11 seq126 82.4 9e-11 >seq3496 Length=15201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||| Sbjct 7698 GGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAC 7639 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 7638 TCCGATATTCTCCA 7625 >seq1991 Length=147557 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||| Sbjct 145187 GGGGAATTAGCTCAGTTGGCTAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAC 145128 Query 17918 TCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 145127 TCCGATATTCTCCA 145114 >seq1604 Length=351056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 157424 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCA 157483 |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| Sbjct 255407 CAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 255348 Query 157484 GCCTG 157488 | ||| Sbjct 255347 GACTG 255343 >seq3436 Length=2346199 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 158117 TGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGAAGTGAGAGCTTC 158176 |||| |||||| ||||||| ||| || ||||||||||||| |||||||||||||| Sbjct 491503 TGGAGAGGTGGCAGAGTGGTCGATTGCGGCGGTCTTGAAAACCGTTGAAGTGAGAGCTTC 491562 Query 158177 CGTGGGTTCGAATCCCACCCTTTCCG 158202 || ||||||||||||| |||| |||| Sbjct 491563 CGGGGGTTCGAATCCCTCCCTCTCCG 491588 >seq1752 Length=186427 Score = 93.3 bits (102), Expect = 5e-14 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 157420 GTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAA 157479 ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 14702 GTCTC-GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAA 14644 Query 157480 TCC 157482 ||| Sbjct 14643 TCC 14641 >seq1690 Length=1574822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||| | Sbjct 1439856 GGGGATTTAGCTCAGTTGGTAGAGCACCTGCCTTGCAAGCAGGATGTCAGGAGTTCGACT 1439797 Query 17919 CCGCTATTCTCCA 17931 | ||| |||||| Sbjct 1439796 CTCCTAATCTCCA 1439784 >seq19236 Length=217251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 158117 TGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGAAGTGAGAGCTTC 158176 |||| |||||| ||||||| ||| || ||||||||||||| |||||| ||||||| Sbjct 83118 TGGAGAGGTGGCAGAGTGGTCGATCGCGGCGGTCTTGAAAACCGTTGAAGTGTGAGCTTC 83059 Query 158177 CGTGGGTTCGAATCCCACCCTTTCCG 158202 || ||||||||||||| |||| |||| Sbjct 83058 CGGGGGTTCGAATCCCTCCCTCTCCG 83033 >seq385 Length=1145925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 |||||||||||||||| ||| |||||||||||| ||||| |||||| |||| ||||||| Sbjct 504577 AGGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAAGGGTTCGA 504636 Query 17917 GTCCGCTATTCTCCA 17931 ||| ||||||||| Sbjct 504637 CTCCCTTATTCTCCA 504651 >seq179 Length=2312354 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 157420 GTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAA 157479 |||| |||||||||||||||||||||||| ||||||||||| || |||| | |||||||| Sbjct 786960 GTCT-AGTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCTCAGGTTCGAA 786902 Query 157480 TCC 157482 ||| Sbjct 786901 TCC 786899 >seq3099 Length=1637421 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCA 157483 ||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| Sbjct 1584998 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCATTGGTTCGAATCCA 1584941 >seq2951 Length=50933 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 16154 GGTGGTGGAATTGGTAGACACCCCAGACTTAAAAT-CTGTTGAGCGTATGCTCGTGCGGG 16212 ||||||||||||||||||||| | |||||||||| |||| || |||| |||||||| Sbjct 41485 GGTGGTGGAATTGGTAGACACGCAGGACTTAAAATCCTGTGGACATTATGTCCGTGCGGG 41426 Query 16213 TTCAAGTCCCGC 16224 |||||||||||| Sbjct 41425 TTCAAGTCCCGC 41414 >seq1702 Length=707479 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||| || Sbjct 285448 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTGGGTTCGAATCCCGC 285389 >seq788 Length=584067 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 16154 GGTGGTGGAATTGGTAGACACCCCAGACTTAAAATCTGTTGAGC-GTATGCTCGTGCGGG 16212 ||||||||||||||||||||| | ||||||||||| ||||| | ||||||||||| Sbjct 133179 GGTGGTGGAATTGGTAGACACGCAGGACTTAAAATCCTGTGAGCATTGCGCTCGTGCGGG 133120 Query 16213 TTCAAGTCCCGCTCG 16227 |||||||||||| || Sbjct 133119 TTCAAGTCCCGCCCG 133105 >seq126 Length=3533043 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||| || Sbjct 646251 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTGGGTTCGAATCCCGC 646310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596122404398720