Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq783 172 1e-37 seq2315 152 1e-31 seq242 116 9e-21 >seq783 Length=580412 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||||| || || ||||| ||||| || || || || ||||||| Sbjct 389904 CAGATTTTTGTGAAGACTCTTACTGGCAAAACCATCACTCTAGAAGTTGAGGCCTCAGAC 389963 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||| || ||||| || || || ||||| || Sbjct 389964 ACAATCGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACCAACAG 390023 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| ||||||||| | || || |||| || ||| | Sbjct 390024 AGATTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGAACCCTGTCCGACTACAACATT 390083 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||| |||||||| ||| |||| Sbjct 390084 CAAAAAGAATCTACACTTCATCTTGTGTTGCGACT 390118 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||||| || || ||||| || || | || || || || || Sbjct 390132 CAGATTTTTGTAAAAACTCTTACCGGGAAAACTATTACTTTGGAAGTCGAGGCTTCGGAT 390191 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| || ||||||||||| ||||| || || || ||||| || Sbjct 390192 ACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAACAG 390251 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || |||||||| || || | |||||| | ||||| ||| | Sbjct 390252 AGATTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCAGATTACAACATT 390311 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| ||||| |||||||| ||||||| Sbjct 390312 CAGAAAGAATCTACACTCCATCTTGTGCTGAGACT 390346 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || ||||| ||||| |||||||| || || ||| ||||| Sbjct 387061 CAGATTTTCGTGAAGACCCTGACAGGGAAAACTATCACCCTAGAAGTTGAAGCTTCAGAT 387120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||| |||||||| ||||| ||||| ||||| || Sbjct 387121 ACCATTGAGAACGTGAAGGCTAAGATTCAAGACAAAGAGGGAATTCCTCCAGACCAACAG 387180 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | ||||| ||||| || || | || || || | Sbjct 387181 AGATTAATCTTTGCTGGCAAACAATTGGAAGACGGAAGAACGCTGTCAGACTACAATATA 387240 Query 178104 CAAAAAG 178110 || |||| Sbjct 387241 CAGAAAG 387247 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || ||||| ||||| | || || || |||||| Sbjct 390360 CAGATTTTCGTGAAAACCCTTACTGGTAAAACCATCACTTTGGAAGTCGAGGCTTCAGAC 390419 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| |||||||||||||| ||||| || || || ||||| || Sbjct 390420 ACGATCGAAAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAACAG 390479 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || |||||||||||||| | || || || | Sbjct 390480 AGATTGATCTTTGCTGGCAAGCAGCTAGAGGATGGAAGGACTCTGTCAGACTACAATATT 390539 Query 178104 CAAAAAG 178110 || |||| Sbjct 390540 CAGAAAG 390546 >seq2315 Length=138946 Score = 152 bits (168), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||| || || ||||| || ||||| ||||||||| || || Sbjct 26781 CAGATTTTTGTGAAAACTCTTACTGGTAAAACCATAACCCTTGAGGTGGAACCATCTGAT 26840 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||| ||||| |||||||| || || ||||| || ||||| Sbjct 26841 ACCATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAGGGGATTCCTCCTGATCAGCAG 26900 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||||| ||||||||| | || ||| | || |||||| | Sbjct 26901 AGATTGATTTTCGCAGGGAAACAGCTGGAAGATGGACGCACACTTTCAGACTATAACATT 26960 Query 178104 CAAAAAG 178110 ||||||| Sbjct 26961 CAAAAAG 26967 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||| || || || | || |||||| ||||| Sbjct 32996 CAGATCTTTGTGAAGACCTTGACAGGAAAGACAATTACATTGGAAGTGGAACCTTCAGAT 33055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||||||| || || || ||||||||||| |||||||| Sbjct 33056 ACCATTGAGAATGTAAAAGCAAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAGCAG 33115 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || ||||||||||| ||||| | || ||| | ||||| || | Sbjct 33116 AGACTCATTTTTGCTGGCAAACAGCTCGAGGATGGTCGCACACTTTCAGATTACAATATT 33175 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || |||||| | ||| Sbjct 33176 CAGAAAGAGTCTACTCTGCATTTGGTT 33202 Score = 136 bits (150), Expect = 1e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||||||||| ||||| || ||||| ||| || || Sbjct 28964 CAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCTGAT 29023 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||| ||||||||||||||||| || |||||||| Sbjct 29024 ACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGACCAGCAG 29083 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||| | || || || ||||||||| | |||||||| Sbjct 29084 CGATTAATTTTTGCAGGAAAACAGTTGGAAGATGG 29118 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||||||||| ||||| || ||||| ||| || || Sbjct 27523 CAGATATTTGTGAAGACCCTCACAGGAAAAACCATCACACTGGAGGTAGAACCATCTGAT 27582 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||| ||||||||||||||||| || || ||||| Sbjct 27583 ACCATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAGCAG 27642 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||| | || || || || |||||| | |||||||| Sbjct 27643 CGATTAATTTTTGCAGGCAAACAGTTGGAAGATGG 27677 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || |||||||| ||||| ||||| || ||||| ||| || || Sbjct 28025 CAGATATTTGTGAAGACCCTCACAGGCAAAACCATCACACTGGAGGTAGAACCATCTGAT 28084 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||| ||||| ||||||||||||||||| || || ||||| Sbjct 28085 ACCATTGAAAATGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAGCAG 28144 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || |||||| | |||||||| | || || | || || || || Sbjct 28145 CGATTAATTTTTGCAGGCAAACAGTTGGAAGATGGTCGCACACTGTCGGACTACAATATC 28204 Query 178104 CAAAAAG 178110 ||||||| Sbjct 28205 CAAAAAG 28211 >seq242 Length=1788442 Score = 116 bits (128), Expect = 9e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||| | || || ||||| || ||||||||||| ||| ||| || Sbjct 1569780 CAGATATTCGTGAAAACTTTAACGGGTAAAACAATTACCCTCGAGGTTGAAGCCTCTGAT 1569839 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||| ||||| |||||||| || || || Sbjct 1569840 ACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAACAG 1569899 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||||| || |||||| | || || | |||||||| | Sbjct 1569900 AGATTGATTTTTGCTGGAAAGCAGCTAGAGGATGGACGAACACTCTCTGATTATAATATT 1569959 Query 178104 CAAAAAG 178110 || |||| Sbjct 1569960 CAGAAAG 1569966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203348837793648