Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq783 111 1e-19 >seq783 Length=580412 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 390127 CCACCACGAAGTCGCAACACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAC 390068 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||||||||| || |||| | ||||||||| | |||| Sbjct 390067 AGGGTTCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGTTGGTCTGGGGGA 390008 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| ||| ||| | || |||| || | | ||||| | ||| || Sbjct 390007 ATGCCTTCCTTATCC-TGAATCTTGGCTTTGACATTTTCGATTGTGTCTGAGGCCTCAAC 389949 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || ||||| || ||||||||||| Sbjct 389948 TTCTAGAGTGATGGTTTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 389901 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||| || || || ||||||||||| || || || || || || |||| || Sbjct 390338 CACAAGATGGAGTGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGTTCGGCCGTCCTC 390279 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| || || |||| | ||||||||| | ||||| || ||||||||| | Sbjct 390278 GAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCC-T 390220 Query 41773 GATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| |||| || | | || || | ||| || |||| || || |||| Sbjct 390219 GAATTTTGGCTTTGACATTCTCGATCGTATCCGAAGCCTCGACTTCCAAAGTAATAGTTT 390160 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || ||||| ||||||||||| Sbjct 390159 TCCCGGTAAGAGTTTTTACAAAAATCTGCAT 390129 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 |||||||| || ||||| || || || | | || || ||||||||||| || || ||| Sbjct 390544 TTCTGAATATTGTAGTCTGACAGAGTCCTTCCATCCTCTAGCTGCTTGCCAGCAAAGATC 390485 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | | ||||||||| | ||||| || ||||||||| ||| | || |||| |||| | Sbjct 390484 AATCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTTTTC 390426 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||||| | ||| || |||| || || |||||||| || || || || ||||| Sbjct 390425 GATCGTGTCTGAAGCCTCGACTTCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACGAA 390366 Query 41854 AATCTGCAT 41862 ||||||||| Sbjct 390365 AATCTGCAT 390357 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| |||||||||||||| ||||| || ||||| || | || || Sbjct 391334 CACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCAGACAGGGTTCGTCCATCTTC 391275 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 || || || || || || || || ||||| || || | |||| || |||||| ||| | Sbjct 391274 AAGTTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATGCCCTCCTTATCC-T 391216 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| |||| || | | ||||| | ||| || |||| || || |||| Sbjct 391215 GAATTTTGGCTTTCACATTTTCGATTGTGTCTGAAGCCTCAACTTCCAAAGTGATGGTTT 391156 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||| ||||| |||||||||||||| Sbjct 391155 TGCCAGTCAAAGTCTTGACGAAAATCTGCAT 391125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462160731990400