Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq2372 149 7e-31 seq3883 96.9 4e-15 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 149 bits (164), Expect = 7e-31 Identities = 322/475 (68%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 141638 TCGTTTTTTCCAAAACGTTCCATCATCAAATCATTCAGTTGAACACCATAATCCATATGA 141697 |||||||| ||||| | ||| || | ||| | ||| || |||||||| | ||| Sbjct 73668 TCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATTTGTACCCCATAATCTAAATGG 73727 Query 141698 CGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCC 141757 || | ||| |||||||| | || |||||| | || | | ||||| ||||| Sbjct 73728 CGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCT 73787 Query 141758 AAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACAT 141817 |||||||| | |||||| | | || || || || || || | || || || ||||| Sbjct 73788 AAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAG 73847 Query 141818 GATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCA 141877 ||||| || || || || || | || |||| |||||| |||||||||| |||| Sbjct 73848 GATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCAGTATGGAACGCTTCG 73907 Query 141878 CCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGCG 141937 || || ||| | ||| |||||| ||| |||| | ||||| |||||||||||| Sbjct 73908 CCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCG 73967 Query 141938 CGTTTAGAGATATATTCAACAATTG---AAGCAGAAGCCTTATTGATAGACTTCAATGAA 141994 |||| || | |||| |||||| | || | || ||| || || |||| || Sbjct 73968 CGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGC---ATTAATTGA-GTCAA-GAC 74022 Query 141995 TCTCCT-GC-CTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAG 142052 | || | || |||||| | ||||| ||||||||||| ||||| ||||| || || | Sbjct 74023 TATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCG 74082 Query 142053 CCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGCTTCATAAAAACG 142107 ||||||| || || || | ||||| | || || | || ||||||||||| Sbjct 74083 CCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 >seq3883 Length=158444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 63566 TTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 63625 || |||||| || |||| || ||||| || || || ||| | ||||||||| || Sbjct 116554 TTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACG 116495 Query 63626 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 63685 || |||||||| || ||||| || || | || ||||| ||||| |||| | | ||| Sbjct 116494 TACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGC 116435 Query 63686 ATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 63741 |||| | |||||| || | |||||||| || ||||| ||||||||||||| Sbjct 116434 ATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 72289 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 72347 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 72348 CATTATACGATATCCGCA 72365 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540324051623320