Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1274 118 1e-21 >seq1274 Length=440581 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 16463 ATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATG 16522 ||||| | ||||| |||||||||| | ||||||||||||||| | || |||||| Sbjct 124445 ATATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATG 124504 Query 16523 GCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGT 16582 || | ||||| |||||||| || || ||||| | || |||||||||| ||||||| Sbjct 124505 GCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGT 124564 Query 16583 TCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTA 16642 || | || |||||||| ||||| || ||| || ||||| || || || | || Sbjct 124565 TCGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGAT 124624 Query 16643 ATGAAATATTTTTCGTCA 16660 ||||||| ||| || ||| Sbjct 124625 ATGAAATGTTTCTCATCA 124642 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAA 16079 ||| |||| ||||||||| || |||||||| ||||||||||||| ||||| || || | Sbjct 123714 TTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACA-TAAGTGTACAGTTCA 123772 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 ||||||| | | | || || | ||||| |||||||||| |||||| || || || | Sbjct 123773 TTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTCAATTTTGACGGCAT 123832 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 ||||||| || ||| | || ||| ||| | || | ||||| ||||| | Sbjct 123833 CTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTTTGTACAATATGTTTGAACATCA 123892 Query 16200 GACACGCGAAGTCGCAATGTAGTCC 16224 ||| ||||| || ||||||| ||| Sbjct 123893 AACATGCGAAATCACAATGTAATCC 123917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511378863091880