Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq1913 179 7e-41 seq3883 122 2e-23 seq916 113 9e-21 >seq1913 Length=212763 Score = 179 bits (198), Expect = 7e-41 Identities = 275/390 (71%), Gaps = 9/390 (2%) Strand=Plus/Minus Query 21463 ACTGCATCCTCTAAATGGTCGGGTGCAAAGTGCGCATATCGCATGGTCATTTTTATATCT 21522 || ||||| || || || || || |||||||| |||||||||||||||||||| |||||| Sbjct 83275 ACCGCATCTTCAAAGTGATCAGGCGCAAAGTGTGCATATCGCATGGTCATTTTGATATCT 83216 Query 21523 GTATGGCCGAGTACGCGCTGCAACACCAAAATATTACCGCCATTCATCATAAAGTGACTA 21582 || |||||||||| || || || ||||| ||||| |||||||||||||| || || Sbjct 83215 GTGTGGCCGAGTATTTTTTGTAAAACTAAAATGTTACCACCATTCATCATAAAATGGCTG 83156 Query 21583 GCGAAGGTGTGACGTAAAACGTGGGTAAGTTGTCCTGCCGGTAGTTCGATACCTGTTCTT 21642 |||||||| || ||||| |||||||| | ||||| | | |||||||| || ||| | Sbjct 83155 GCGAAGGTATGGCGTAATACGTGGGTTAATTGTCGTTCGGGTAGTTCTATTGCTGCACGA 83096 Query 21643 TCCAAAGCTGACCGGAACGCGCCATAACAATCACTGAACAACCGGCCCTTTTTATCATCA 21702 || | ||||| |||||||| |||||| | || | || || || | Sbjct 83095 TCGATTGCTGAGCGGAACGCTGAATAACATGGTGTAAATAGGTTACCATTCTT---TTTG 83039 Query 21703 GGCAGAGACTCATAGAGCTCTTTGCTGATTGGGACGGTGCGATTTTTTCTACCTTTCGTG 21762 || | | | |||| | | ||| ||||| | ||| ||||| | ||||||| ||| Sbjct 83038 GGAATTTCGTTAAAGAGTTTGTCGCTAATTGGAATGGTTCGATTGCGTTTACCTTTTGTG 82979 Query 21763 TTGGTGTATGTGATTTT---GTATTTCGCGAGTTGGCTTTTTCTCAGACTCTCGGCCTCA 21819 ||| | || |||||||| | ||| | || || |||| || || ||||| || Sbjct 82978 TTGATATAGGTGATTTTCCCATCTTTAACTTGTGTGCCTTTT---AGGCTTTCGGCTTCG 82922 Query 21820 GACCACCGTGCGCCAGTTGCGAGACAGATT 21849 ||||| ||| || ||||| | ||||||| Sbjct 82921 CTCCACCTTGCTCCTGTTGCTAAACAGATT 82892 >seq3883 Length=158444 Score = 122 bits (134), Expect = 2e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 21451 GGATTTAGTTTAACTGCATCCTCTAAATGGTCGGGTGCAAAGTGCGCATATCGCATGGTC 21510 || |||| | || | || || || || || |||||||||||||| ||||| ||||| ||| Sbjct 35062 GGGTTTAATATAGCCGCTTCTTCCAAGTGATCGGGTGCAAAGTGAGCATAACGCATTGTC 35003 Query 21511 ATTTTTATATCTGTATGGCCGAGTACGCGCTGCAACACCAAAATATTACCGCCATTCATC 21570 | ||| ||||| ||||| || | || || | |||| ||||| ||||| |||||| Sbjct 35002 ACTTTAATATCAGTATGCCCTAATATTTTTTGTAGTACCAGTATATTGCCGCCGTTCATC 34943 Query 21571 ATAAAGTGACTAGCGAAGGTGTGACGTAAAACGTGGGTAAGTTGTCCTGCCGGTAGTTCG 21630 ||||| || || ||||| ||||| |||| ||||| || | ||| || | |||| ||| Sbjct 34942 ATAAAATGGCTGGCGAATGTGTGGCGTAGTACGTGCGTTAATTGGCCGTCTGGTAATTCA 34883 Query 21631 ATACC 21635 ||||| Sbjct 34882 ATACC 34878 >seq916 Length=289624 Score = 113 bits (124), Expect = 9e-21 Identities = 346/527 (66%), Gaps = 15/527 (3%) Strand=Plus/Plus Query 14987 CGTTTTTGGGGGAACCGCACATGCTCTGATGACCCGCTTTTCCTGTTTGAGAACTACACC 15046 ||||||||||| || || || |||| || |||| ||||||| |||||||| Sbjct 155758 CGTTTTTGGGGTTCTCGTACTTGTACTGAAGATGGCTTTTTTATGTTTGAAAACTACACT 155817 Query 15047 CGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACATGTGGG---CGGTCGAT 15103 ||||| | || || ||||| ||| |||| || || || ||||| | | ||| Sbjct 155818 CGAACAACTCAAGTTCTGGCGGACTCAATCGCGGATGC---CATGTTTGATTTTATTGAT 155874 Query 15104 AAGCCCATCACCGCATCGCTCATCCGTGACATTGTCGA--CGGCATTAACGCCAAATTCC 15161 || || || ||| || | ||| |||||||| || ||| | || ||| |||| Sbjct 155875 AAACCGATGCACGCCTCATTAATCAAAGACATTGTTGAATCGG--TAAATAACAAGTTCC 155932 Query 15162 GCGAGCTGAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAG-GAATCG 15220 | || ||||||||||||||||| ||| | || ||| || ||||| || | | |||| Sbjct 155933 GAGAACTGAAATCAAATGGCTATATCATTGATGGTAAAGCGTGGTTTGATGCGTCAATC- 155991 Query 15221 AACGATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGGTT 15280 ||| ||||| | ||| | || || || | || || ||||| ||||| || ||| Sbjct 155992 AACACCAAGGATCAACACAAAGAAGGCAAGCTAAAAATTGATTACGATTATACGCCTGTT 156051 Query 15281 CCCCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCTGGTGAATCTG 15340 || || || |||| | | | ||||||||| || |||| ||| | || || | Sbjct 156052 CCACCTCTTGAAAATTTAATGTTTAACCAGCGTATTACTGATAGTTATTTAGTTGATTTA 156111 Query 15341 GCTGAATCGGT--CAACAGCTAAGGAGCCTGAAACAACATGGCACTACCCCGCAAACTTA 15398 || | || || || || |||||| | ||| ||||||| ||||| ||| | | Sbjct 156112 GCAAATTCAGTTGCAGCAAACTAGGAGCGTTTAAC-TCATGGCATTACCCAAAAAATTGA 156170 Query 15399 AATATCTGAACATGTTCAATGACGGCCTTAGCTACATGGGCGTTGTTGAATCCGTGACGC 15458 ||||| | ||| |||| | ||| || | ||| || || | | | ||||| | || Sbjct 156171 AATATTTTAACGTGTTTATTGATGGTGCTTCCTATATTGGTGAAGCTAAATCCATCACAT 156230 Query 15459 TGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATG 15505 | || || || || | || | |||| |||||| || | |||||| Sbjct 156231 TACCTAAACTTACACAAAAATTGGAAAGCTATCGTGGTGCTGGTATG 156277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97868738952188