Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq320 87.8 1e-12 >seq320 Length=1637695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 170/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 || || | |||| ||||||| | |||||| || || |||||||| || || | ||| Sbjct 153988 TGTGCCAGCATGTAAGTTAACAAAGAATAAGATGCGATATTAAATGGTACGCCAAGACCC 153929 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG- 101877 || ||||| ||||||||| ||||| || || | || ||||| ||||||||||| Sbjct 153928 ATGTCAGCGCTTCTTTGATAAAGTTGGCATGATAACTCTCCATTGTTTACATAAAATTGT 153869 Query 101878 ACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCAC 101936 || || ||| ||||| || || | ||||||| | |||||| ||||| || Sbjct 153868 AC--AAGACAGTGACAGGGAGGTAGAGCCATTTTTGAAATGTCGCCTGGGTTCCATGCTG 153811 Query 101937 ACATTAACATCCTTCTATCTGTAGG-GTTTGTTTTTATAGTATCAATCAACTGTTTTAAT 101995 |||||| || | ||||| | || | || || ||| |||| || | ||||||||| Sbjct 153810 ACATTACAATTCGCCTATCATTGGGAGAATG-TTGTATCTTATCTATGATCTGTTTTAAC 153752 Query 101996 TGGTC 102000 || || Sbjct 153751 TGATC 153747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361226725118309