Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq418 159 4e-34 seq1274 120 4e-22 >seq418 Length=3833963 Score = 159 bits (176), Expect = 4e-34 Identities = 198/269 (74%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||| | ||| ||| || | | ||||| ||| || || || |||| ||| | | ||| Sbjct 2670185 CTGTACAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 2670126 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || || | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| Sbjct 2670125 TTCAGTCAGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCT 2670066 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 | | ||||||||||||||||| ||||| | ||| ||||||||||| || ||||| || Sbjct 2670065 TCTTGCATAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGC 2670006 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 53293 ||| ||||| || |||||||| || | |||||| |||||||| || ||||| | Sbjct 2670005 AGTAGATGCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCC--ATGTTTAGCA 2669948 Query 53294 ATTTTATCTTTTAGAGGTTCCCAATTCCA 53322 ||||| ||||| ||| | ||| ||||| Sbjct 2669947 ATTTTTTCTTTCAGAATTGTCCAGTTCCA 2669919 Score = 140 bits (154), Expect = 4e-28 Identities = 218/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--CTTCC 54279 |||| | ||||||||| | |||||| ||| ||||| || || || ||| | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 2668581 Query 54280 ACTGGCACGAATATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 || || |||||| | || | | || || || || || || ||| || | || Sbjct 2668580 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 2668522 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| || Sbjct 2668521 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 2668462 Query 54399 AACAGCT 54405 |||| || Sbjct 2668461 AACAACT 2668455 Score = 113 bits (124), Expect = 5e-20 Identities = 236/348 (68%), Gaps = 14/348 (4%) Strand=Plus/Minus Query 53549 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 53608 ||||| ||||| |||||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 53609 ATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 53665 | ||| |||||||| | | || | | |||||| |||| || | |||||| Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 2669389 Query 53666 AGAAAATCAAATTGTCCATCTA-------TTACAAACATGTTCAATGCAATAGATGCCAG 53718 |||||||||| ||| || ||||||||||||||| ||| || || || | Sbjct 2669388 TCAAAATCAAAT-GTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAA 2669330 Query 53719 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 53778 ||| || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 2669329 ATTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACT 2669270 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 2669269 GCTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAG 2669210 Query 53839 AATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 ||| | || || || ||||||| || || | | ||| ||| |||| Sbjct 2669209 CATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCA 2669162 Score = 102 bits (112), Expect = 1e-16 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||||||| | |||||| || || |||||||||| | |||||| |||||| | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| || ||||| | || | ||| |||||||||||||| |||||||| |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 54112 | | ||| ||| |||| ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 | ||| || | | |||||| || || |||||| || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 | ||||| || | |||||||||||| || ||||||||||| | || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 | || || | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 54644 TAAATAAT 54651 ||||| || Sbjct 2668143 TAAATTAT 2668136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||| || || |||| |||| || |||| ||||||||||| |||||||||||| Sbjct 2669756 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCA 2669697 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||| | || || || || | |||| || | |||||||||| || ||||| Sbjct 2669696 CCATAATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAC 2669637 Query 53504 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| ||| || |||| || ||||| | || |||| ||||| || Sbjct 2669636 GGATATCGCATTAAAAGGAAT----GCATCTGCAAGACCCTGAATTCCAATCCC 2669587 >seq1274 Length=440581 Score = 120 bits (132), Expect = 4e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 ||||| | | ||||||||||||||| | |||||||| || || | ||||| |||| Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 | | |||||| || |||||||| | |||||||| | |||||||| || |||||||| Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | | ||| ||||| || ||||| ||| || ||||| || || || ||||| || Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 24574 TAAAATATTTTTCGTC 24589 | |||| ||| || || Sbjct 124626 TGAAATGTTTCTCATC 124641 Score = 113 bits (124), Expect = 5e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738 ||| |||||| | ||||||| ||||| | ||| |||||| |||||||| | || | Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTTCTTTCAGTA 124861 Query 24739 TTGGTTC 24745 |||||| Sbjct 124862 ATGGTTC 124868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593680343770320