Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq503 96.9 3e-15 seq1081 93.3 4e-14 seq739 82.4 7e-11 >seq503 Length=216272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/128 (78%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| || ||||| ||||| | || ||||||||| ||| | || |||||| Sbjct 160960 AAGCAAAAA-TTCAAGATAAGGAAGGAATTCCGCCAGATCAACAGAGATTGATTTTTGCG 161018 Query 29100 GGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157 || ||||||||||||||| | | ||||| | |||||||| |||||||||||||| | Sbjct 161019 GGTAAACAACTGGAAGATGGACGCACACTAT--CAGATTACAACATTCAGAAGGAATCAA 161076 Query 29158 CTCTTCAC 29165 |||| ||| Sbjct 161077 CTCTCCAC 161084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCG 29133 |||||||| ||| | || |||||||| ||||||||||||||| | | ||||| | | Sbjct 162442 GATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTAT--CAG 162499 Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||||| ||||||||| | || | || | ||||||| Sbjct 162500 ATTACAATATTCAGAAGGAATCGACTCTTCACCTTGTTCTTCGTCTCAGAGGAGG 162554 >seq1081 Length=102446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||||||| | |||||||| || |||||| | || ||| | |||| | | || Sbjct 20030 AGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGA 19971 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| |||||||||||||||||||| | ||| | ||| |||| ||| |||| || Sbjct 19970 TTATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAGAGGTGG 19917 >seq739 Length=1399493 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | |||||| | || || |||||||||||| ||| ||| | | Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| || ||||| ||| | || ||| || Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | |||||||| ||||||||||| |||||| | |||| | | ||||| || Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || || || || || | || || || | || ||||| Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428306980102145