Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22]
5,559 sequences; 249,185,056 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq503 96.9 3e-15
seq1081 93.3 4e-14
seq739 82.4 7e-11
>seq503
Length=216272
Score = 96.9 bits (106), Expect = 3e-15
Identities = 100/128 (78%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099
||||||||| || ||||| ||||| | || ||||||||| ||| | || ||||||
Sbjct 160960 AAGCAAAAA-TTCAAGATAAGGAAGGAATTCCGCCAGATCAACAGAGATTGATTTTTGCG 161018
Query 29100 GGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157
|| ||||||||||||||| | | ||||| | |||||||| |||||||||||||| |
Sbjct 161019 GGTAAACAACTGGAAGATGGACGCACACTAT--CAGATTACAACATTCAGAAGGAATCAA 161076
Query 29158 CTCTTCAC 29165
|||| |||
Sbjct 161077 CTCTCCAC 161084
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCG 29133
|||||||| ||| | || |||||||| ||||||||||||||| | | ||||| | |
Sbjct 162442 GATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTAT--CAG 162499
Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||||||||||||||||||||| ||||||||| | || | || | |||||||
Sbjct 162500 ATTACAATATTCAGAAGGAATCGACTCTTCACCTTGTTCTTCGTCTCAGAGGAGG 162554
>seq1081
Length=102446
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
||||||||||||| | |||||||| || |||||| | || ||| | |||| | | ||
Sbjct 20030 AGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGA 19971
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||| |||||||||||||||||||| | ||| | ||| |||| ||| |||| ||
Sbjct 19970 TTATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAGAGGTGG 19917
>seq739
Length=1399493
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || || | |||||| | || || |||||||||||| ||| ||| | |
Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | || ||||| |||||| || ||||| ||| | || ||| ||
Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| | | |||||||| ||||||||||| |||||| | |||| | | ||||| ||
Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||||||| || || || || || | || || || | || |||||
Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428306980102145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |