Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq1913 140 7e-29 seq1614 140 7e-29 seq3883 113 9e-21 seq916 91.5 3e-14 seq3267 84.2 5e-12 >seq1913 Length=212763 Score = 140 bits (154), Expect = 7e-29 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 719 CGGGTTGAATTTGACCGCACTTTCTAAATGCGAAGGGGCGAAGTGCGCATAACGCATCGT 778 ||| || || | |||||| ||| || || ||| || ||||| ||||| ||||| || Sbjct 83288 CGGATTCAACCTTACCGCATCTTCAAAGTGATCAGGCGCAAAGTGTGCATATCGCATGGT 83229 Query 779 CATTTCGATAGTTGAATGTCCGAGAATTTCTTTCAATACCAAAATATTCCCACCGTTCAT 838 ||||| |||| || || ||||| |||| || || || ||||| || ||||| ||||| Sbjct 83228 CATTTTGATATCTGTGTGGCCGAGTATTTTTTGTAAAACTAAAATGTTACCACCATTCAT 83169 Query 839 CATAAAATGGCTGGCGAATGTATGGCGCAAAACGTGGGTAAGTTGCCCTTTCGGCAATTC 898 |||||||||||||||||| |||||||| || |||||||| | ||| | || || | ||| Sbjct 83168 CATAAAATGGCTGGCGAAGGTATGGCGTAATACGTGGGTTAATTGTCGTTCGGGTAGTTC 83109 Query 899 AATTTCGGCACG 910 ||| | ||||| Sbjct 83108 TATTGCTGCACG 83097 Score = 138 bits (152), Expect = 2e-28 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103454 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 103395 Query 416 ACTGAGCTAACGACCC 431 |||||||||||||||| Sbjct 103394 ACTGAGCTAACGACCC 103379 >seq1614 Length=125919 Score = 140 bits (154), Expect = 7e-29 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38240 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 38181 Query 416 ACTGAGCTAACGACCCA 432 ||||||||||||||||| Sbjct 38180 ACTGAGCTAACGACCCA 38164 >seq3883 Length=158444 Score = 113 bits (124), Expect = 9e-21 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 717 AGCGGGTTGAATTTGACCGCACTTTCTAAATGCGAAGGGGCGAAGTGCGCATAACGCATC 776 || ||||| ||| | |||| ||| || || || || ||||| ||||||||||| Sbjct 35065 AGTGGGTTTAATATAGCCGCTTCTTCCAAGTGATCGGGTGCAAAGTGAGCATAACGCATT 35006 Query 777 GTCATTTCGATAGTTGAATGTCCGAGAATTTCTTTCAATACCAAAATATTCCCACCGTTC 836 |||| || ||| | ||| || | |||| || | ||||| ||||| || |||||| Sbjct 35005 GTCACTTTAATATCAGTATGCCCTAATATTTTTTGTAGTACCAGTATATTGCCGCCGTTC 34946 Query 837 ATCATAAAATGGCTGGCGAATGTATGGCGCAAAACGTGGGTAAGTTGCCCTTTCGGCAAT 896 ||||||||||||||||||||||| ||||| | ||||| || | ||| || | || ||| Sbjct 34945 ATCATAAAATGGCTGGCGAATGTGTGGCGTAGTACGTGCGTTAATTGGCCGTCTGGTAAT 34886 Query 897 TCAAT 901 ||||| Sbjct 34885 TCAAT 34881 >seq916 Length=289624 Score = 91.5 bits (100), Expect = 3e-14 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 765 GCATAACGCATCGTCATTTCGATAGTTGAATGTCCGAGAATTTCTTTCAATACCAAAATA 824 ||||| | | | || |||| |||| | || ||||| |||| || || || ||||| Sbjct 65559 GCATATCTCGTGGTTATTTTGATACCGGTGTGGCCGAGTATTTTTTGTAAAACTAAAATG 65618 Query 825 TTCCCACCGTTCATCATAAAATGGCTGGCGAATGTATGGCGCAAAACGTGGGTAAGTTGC 884 || || ||||||||||| ||||||||| ||||||| ||||| || |||||||| | ||| Sbjct 65619 TTTCCGCCGTTCATCATGAAATGGCTGACGAATGTGTGGCGTAATACGTGGGTTAATTGT 65678 Query 885 CCTTTCGGCAATT 897 | || || |||| Sbjct 65679 CGTTCGGGTAATT 65691 >seq3267 Length=144362 Score = 84.2 bits (92), Expect = 5e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 348 AATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTG 407 ||| | | |||||||| |||| || ||||||| ||||||| |||||| |||| ||| Sbjct 133721 AATTTAAATGGTGGGTTGTGAGGGGATCGAACCCGCGACCAATTGATTAAGAGTCAACTG 133662 Query 408 CTCTACCGACTGAGCTAACGACCC 431 ||||||||||||||||||| |||| Sbjct 133661 CTCTACCGACTGAGCTAACAACCC 133638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103407573292286