Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1081 93.3 3e-14 seq503 91.5 1e-13 seq2682 87.8 1e-12 >seq1081 Length=102446 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||||||| | |||||||| || |||||||| || ||| | |||| | | || Sbjct 20030 AGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGA 19971 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||| ||||||||||| | ||| | ||| |||| ||| |||| || Sbjct 19970 TTATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAGAGGTGG 19917 >seq503 Length=216272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || | || || ||||| || || ||| || | | Sbjct 160652 AATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATC 160711 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| || ||| |||||||||||| | || ||||| Sbjct 160712 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 160771 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||| | ||||| || || |||||||||||||| || || | || || || Sbjct 160772 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 160831 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||||||||| ||||||||| Sbjct 160832 TATTCAAAAGGAATCGACTCTTCAC 160856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/238 (68%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| | || || ||||| || || ||| ||| | | Sbjct 162319 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162378 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC- 25152 ||| || | | || ||||| || ||| |||||||||||| | || ||||| Sbjct 162379 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCG 162438 Query 25153 -------AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGG 25203 |||| ||| | || |||||||| |||||| |||||||| | | ||||| Sbjct 162439 CCGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTAT-- 162496 Query 25204 CCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | |||||||||||||| |||||||| ||||||||| | || | || | ||||||| Sbjct 162497 CAGATTACAATATTCAGAAGGAATCGACTCTTCACCTTGTTCTTCGTCTCAGAGGAGG 162554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| | || || ||||| || || ||| || | | Sbjct 161635 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTC 161694 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| || ||| |||||||||||| | || |||||| Sbjct 161695 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCA 161754 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||| | ||||| || || |||||||||||||| || || | || || || Sbjct 161755 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 161814 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||| ||||| ||||||||| Sbjct 161815 TATTCAAAAAGAATCGACTCTTCAC 161839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| || || ||| || | || Sbjct 161864 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 161923 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || ||| |||||||||||| | || ||||||| Sbjct 161924 GACACTATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161983 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | ||||| || || |||||||||||||| || || | || || ||| Sbjct 161984 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 162043 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 |||||||| ||||| ||||||||| Sbjct 162044 ATTCAAAAAGAATCGACTCTTCAC 162067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| | || || ||||| || || ||| ||| | | Sbjct 162555 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162614 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| || ||| |||||||||||| | || ||||| Sbjct 162615 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 162674 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||| | ||||| || || ||||||||||| || || || |||| || || Sbjct 162675 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAA 162734 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||| || |||||||| Sbjct 162735 TATTCAAAAGGAGTCAACTCTTCA 162758 >seq2682 Length=416 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || ||||| || || ||| || | || Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || ||| |||||||||||| | || |||||| Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | ||||| || || |||||||||||||| || || | || || ||| Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 141 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| |||||||| Sbjct 140 ATTCAAAAGGAATCGACTCTTCA 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410768968388426