Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq739 129 5e-25 seq503 89.7 4e-13 >seq739 Length=1399493 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | |||||| || || |||| || |||||||| |||||||| ||||| Sbjct 7258 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7199 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || || ||||| ||||| |||| | ||||||||| || ||||| Sbjct 7198 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7139 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| ||||| |||||| ||||| | || | ||||| | |||| || || Sbjct 7138 ATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCT-TCAAC 7080 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 7079 TTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| || || |||| ||| |||||||| || ||||| ||||| Sbjct 8200 CCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 8141 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || |||||||| ||||| |||| | ||||||||| || ||||| Sbjct 8140 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 8081 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| ||||| |||||| ||||| | || | ||||| | |||| || || Sbjct 8080 ATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCT-TCAAC 8022 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 8021 TTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 >seq503 Length=216272 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||| || || ||| || ||||| ||||| | ||||| ||| Sbjct 162752 GTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCA 162693 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | ||| |||||||| || || || || || || ||| || || Sbjct 162692 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 162633 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | ||| || || | || | |||||| || || || ||| Sbjct 162632 ACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTT 162573 Query 118722 TTTACAAAAATCTGCAT 118738 ||||||||||| ||||| Sbjct 162572 TTTACAAAAATTTGCAT 162556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGC 118592 ||||| || || || || ||||||||||||| || |||||| |||| ||| || || Sbjct 161084 GTGGAGAGTTGATTCCTTCTGAATGTTGTAAT--CTGATAGTGTGCGTCCATCTTCCAGT 161027 Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 ||||| || || | || | | ||| ||||| || || || || ||||| ||| |||| Sbjct 161026 TGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATT 160967 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 ||| ||| || | ||| | ||||| | ||| || || || | || | ||||| || Sbjct 160966 TTTGCTTTTACATTTTCTATCGTGTCGGAAGCT-TCAACTTCAAGTGTGATAGTTTTTCC 160908 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| ||||| Sbjct 160907 TGTAAGGGTCTTCACGAAAATTTGCAT 160881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801007854828