Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq51 104 4e-17 seq317 98.7 2e-15 >seq51 Length=996734 Score = 104 bits (114), Expect = 4e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 135636 CGATCCTGTTTTGCATATAGAACTTAGGAGA-TGGGCGGATGTTTTTATTATAGCGCCCT 135694 ||||||||| || ||||| || || || | | ||||| ||| | ||| | || || || Sbjct 185897 CGATCCTGTATTACATATTGATCT-AGTAAAGTGGGCTGATTTATTTTTAATCGCTCCAC 185839 Query 135695 TAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTA 135754 || || ||||| | | |||||||| | ||| |||||||||||| | | || | | Sbjct 185838 TAGATGCCAATACCCTTGGTAAAATAGCCAGTGGCATATGCGATAATATCTTAACTTGTG 185779 Query 135755 TTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814 | | | | ||||||||| || || || | ||||| ||||| ||||||||||| | Sbjct 185778 TCGCACGTGCCTGGGATCCATTGAAGCCTTTGATTTTTTGTCCCGCAATGAATACAAAAA 185719 Query 135815 TGTGGGAACATCCTATTAC 135833 |||||||||||||| |||| Sbjct 185718 TGTGGGAACATCCTGTTAC 185700 >seq317 Length=3049029 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 189386 AATGATCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGAT 189445 || ||| | ||||| ||| ||||||| | | || | ||||| | |||| |||||| Sbjct 884243 AAGGATACAAGAAAATATGTATATTCTTTAAGTCAGTTGGAAAATTCTAAAACACATGAT 884184 Query 189446 CCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTA 189505 | ||||||| || | |||| || ||| | | | ||||||||||||| | || ||| Sbjct 884183 GATTTATGGAATGCATGTCAAAATCAAATGATAATAACAGGAAAAATGCATGGATTCTTA 884124 Query 189506 CGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGA 189552 ||||||||||||| ||||| || | ||||||||| || |||||| Sbjct 884123 AGAATGTATTGGGCAAAGAAATTATTAGAATGGACTGAAATACCTGA 884077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923132649362360