Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq791 120 3e-22 seq102 120 3e-22 seq1334 116 4e-21 seq672 111 2e-19 seq92 95.1 1e-14 seq739 93.3 5e-14 seq503 91.5 2e-13 >seq791 Length=95952 Score = 120 bits (132), Expect = 3e-22 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 70810 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 70869 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 70870 TGACCACTATACTACCGAGGA 70890 >seq102 Length=5466090 Score = 120 bits (132), Expect = 3e-22 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 5247278 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5247219 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 5247218 TGACCACTATACTACCGAGGA 5247198 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5246369 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTG 5246310 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 5246309 TACTAACGAGGATT 5246296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 60058 AAAATTT---TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||| |||||||| ||||||||||||||||||||| || Sbjct 4147916 AAAATTTAATTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 4147857 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||| |||||||| |||||| Sbjct 4147856 ACTGACCGCTATACTATCGAGGA 4147834 >seq1334 Length=405816 Score = 116 bits (128), Expect = 4e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 180755 AAAAAATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 180814 Query 60117 TCACCACTATACTACCGAGGATTGAAT 60143 | |||||||||||||||||||||| || Sbjct 180815 TGACCACTATACTACCGAGGATTGCAT 180841 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 182041 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 182100 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 182101 ATACTACCGAGGA 182113 >seq672 Length=307416 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || || ||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 52132 AAGAAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 52191 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 52192 TGACCACTATACTACCGAGGA 52212 >seq92 Length=412666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 60240 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 60181 Query 60125 ATACTACCGAGGATT 60139 ||||| |||||||| Sbjct 60180 GTACTAACGAGGATT 60166 >seq739 Length=1399493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| || ||||| | |||| ||| || || || || ||||| | ||||| | | || Sbjct 8186 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 8127 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 |||||||| || ||||| || || | ||||||||||| | || | | ||| ||||| Sbjct 8126 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 8067 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | || | || | | ||||| | ||| || || | ||||||| Sbjct 8066 C-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGG 8008 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || || ||||||||||| |||||| Sbjct 8007 TTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| || ||||| | ||| ||| || ||||| || ||||| | ||||| | | || Sbjct 7244 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7185 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 ||||| || || ||||| || || | ||||||||||| | || | | ||| ||||| Sbjct 7184 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7125 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | || | || | | ||||| | ||| || || | || |||| Sbjct 7124 C-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGG 7066 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || || ||||||||||| |||||| Sbjct 7065 TTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 >seq503 Length=216272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| | || | ||||| || |||||||| ||||||||||||| Sbjct 162319 TCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGA 162260 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| | || || || ||||| ||||| || || | || || ||||| | || Sbjct 162259 GAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGG 162200 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||| | ||| |||||| ||| | | | | ||| ||| | ||| | Sbjct 162199 AATTCCTTCTTTGT-CTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAA 162141 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| ||||| || || || ||||| || || |||||||| Sbjct 162140 CTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571777865824520