Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq739 127 3e-24 seq1081 122 1e-22 seq129 116 6e-21 seq503 111 2e-19 seq647 100 4e-16 seq2682 91.5 2e-13 seq2222 87.8 3e-12 >seq739 Length=1399493 Score = 127 bits (140), Expect = 3e-24 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| ||||| ||||| | || || ||||| || |||||||||| Sbjct 7032 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 6973 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| ||||| |||||||| ||||| | ||||| || |||| Sbjct 6972 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 6913 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||| ||||| || || ||| ||| | Sbjct 6912 GAATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAA 6853 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGA 146286 |||| || || || ||||| |||||||| || |||| ||| || ||||| || |||| Sbjct 6852 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTTGGTAGA 6795 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| ||||| ||||| | || || ||||| || |||||||||| Sbjct 7488 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7429 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| ||||| | ||||| || |||| Sbjct 7428 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7369 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| ||||| Sbjct 7368 GAATACCCTCTTTGTCTTG 7350 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| ||||| ||||| | || || ||||| || |||||||||| Sbjct 7716 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTG 7657 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| ||||| | ||||| || |||| Sbjct 7656 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7597 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| ||||| Sbjct 7596 GAATACCCTCTTTGTCTTG 7578 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| ||||| ||||| | || || ||||| || |||||||||| Sbjct 7944 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7885 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| ||||| | ||||| || |||| Sbjct 7884 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7825 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| ||||| Sbjct 7824 GAATACCCTCTTTGTCTTG 7806 Score = 116 bits (128), Expect = 6e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| ||||| ||||| | || || ||||| || |||||||||| Sbjct 7260 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7201 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| ||||| | ||||| || |||| Sbjct 7200 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7141 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| || || Sbjct 7140 GAATACCCTCTTTGTCCTG 7122 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| ||||| ||||| | || || ||||| || |||||||||| Sbjct 8202 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 8143 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| ||||| |||||||| ||||| | ||||| || |||| Sbjct 8142 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 8083 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| || || Sbjct 8082 GAATACCCTCTTTGTCCTG 8064 >seq1081 Length=102446 Score = 122 bits (134), Expect = 1e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||||||| | | || || || ||||| |||||||| || |||||||||||||| Sbjct 19916 TCCACCTCTTAAACGTAGCACTAAGTGTAATGTAGATTCCTTCTGAATATTATAATCTGA 19975 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| |||||||||||||||||||| || |||||||| ||||| || || Sbjct 19976 TAAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 20035 Query 146170 AATTCCT 146176 ||||||| Sbjct 20036 AATTCCT 20042 >seq129 Length=1828789 Score = 116 bits (128), Expect = 6e-21 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||||||||| ||||| | | ||| || ||||| |||||||||||||| | | | Sbjct 1158777 ATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGACGT 1158718 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || ||||||||||||||||| || |||| Sbjct 1158717 TGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTTCAATAGTA 1158658 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| ||||||||| || ||||| |||||||| || || ||||| | ||||| ||| Sbjct 1158657 TCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAATATCTGC 1158598 Query 146276 ATTTT 146280 || || Sbjct 1158597 ATCTT 1158593 >seq503 Length=216272 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | ||| | ||| | || ||||| || |||||| ||||| | Sbjct 162320 TTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAG 162261 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||| ||||||||||| ||||||||||| || || |||| Sbjct 162260 AGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAG 162201 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||||||||| ||||| ||||| ||| ||| | Sbjct 162200 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAA 162141 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| |||||||| ||||| ||||| | || || | ||| |||||||| Sbjct 162140 CTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 105 bits (116), Expect = 1e-17 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | ||| | ||| | || ||||| || |||||| ||||| | Sbjct 160653 TTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAG 160594 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | | ||| || |||||||| |||||||| ||||| || || || || |||| Sbjct 160593 AAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAG 160534 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| |||||||||||||| ||||| ||| ||| | Sbjct 160533 GAATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAA 160474 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| ||||| ||||| | ||| || | ||| || ||||| Sbjct 160473 CTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 160425 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/198 (68%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| ||||| || || || |||||||| || || | | ||| || | |||||| || Sbjct 161078 AGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACC 161019 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 |||||||||||||| || ||||| || ||||||||||| |||||||| Sbjct 161018 CGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTT 160959 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 || || ||| ||| ||||| |||||||| ||||| ||||| | || Sbjct 160958 TACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGT 160899 Query 146260 TTTAATGAATATTTGCAT 146277 || | ||| |||||||| Sbjct 160898 CTTCACGAAAATTTGCAT 160881 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/198 (68%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| |||||||| ||||| || || | | || || |||||||| || Sbjct 162061 AGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACC 162002 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 ||| || |||||||| || ||||| || ||||| ||||||||||| || Sbjct 162001 AGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTT 161942 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 ||| |||||| || |||||||| || || ||||| ||||| | || Sbjct 161941 AACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGT 161882 Query 146260 TTTAATGAATATTTGCAT 146277 || | ||| |||||||| Sbjct 161881 CTTGACGAAAATTTGCAT 161864 Score = 87.8 bits (96), Expect = 3e-12 Identities = 136/200 (68%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 146080 AGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTC 146138 ||| ||||| ||| || |||||||| ||||| || || | | || || |||||||| | Sbjct 160850 AGTCGATTCCTTTTGA-ATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTAC 160792 Query 146139 CAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNN 146198 |||| || |||||||| || ||||| || ||||| ||||||||||| || Sbjct 160791 CAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCT 160732 Query 146199 NNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATG 146258 ||| ||||| || |||||||| || || ||||| ||||| | | Sbjct 160731 TGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGG 160672 Query 146259 TTTTAATGAATATTTGCATT 146278 | || | ||| ||||||||| Sbjct 160671 TCTTGACGAAAATTTGCATT 160652 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/199 (67%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| |||||||| ||||| || || | | || || |||||||| || Sbjct 161833 AGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACC 161774 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 ||| || |||||||| || ||||| || ||||| ||||||||||| || Sbjct 161773 AGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTT 161714 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 ||| |||||| || ||||| || || || ||||| ||||| | || Sbjct 161713 GACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGT 161654 Query 146260 TTTAATGAATATTTGCATT 146278 ||| | || ||||||||| Sbjct 161653 TTTTACAAAAATTTGCATT 161635 >seq647 Length=2209093 Score = 100 bits (110), Expect = 4e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 23992 ACTTTTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAACCAT 24051 ||| ||||| |||| |||| ||| ||||||| || ||| | || |||||| ||||||| Sbjct 1067811 ACTGTTTGA-TAAATTCTTGCCCTCTTACAAGATTCACAAATTCGCATTTAGGAAACCAT 1067869 Query 24052 CTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAA 24111 ||||| |||| |||| | |||||| || |||||| || ||||||||||||||| Sbjct 1067870 CTTGCATGTTCAGTCCATGCATCATCTGTTGCTTCCCAATTTCGTAAACCACCATCACAG 1067929 Query 24112 TAAAAGCATTTAACTTTATCAC 24133 | ||| ||| |||| | |||| Sbjct 1067930 TGAAAACATCTAACATGGTCAC 1067951 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 24005 AATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTGTTGTA 24064 |||||| |||| || | | |||||| |||||| |||||| | |||||||| Sbjct 1060958 AATCTTGCCCTTGCACGATTAATACATAACAGCATTTAGAAAACCACTTAGCGTGTTGCT 1061017 Query 24065 TCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCATTTAA 24124 |||||||||||| |||| |||||| | || |||||||| |||| | | || Sbjct 1061018 CCCAAGGATCATCTTCTGGTTCCCAATCTTTCAAACCACCTCCACAGTGGTAACACAAGG 1061077 Query 24125 CTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTTTCTGTAGAAATAG 24184 || |||| ||| ||||||||||| || || || || |||| || |||| | | | Sbjct 1061078 TTTGGTCACCTTTCCCAGTATAAAAAAAGCCTGCATCGGCTAATTGTTCTTTTGTTTGTG 1061137 Query 24185 GCATTGAAATAGGCCA 24200 |||| || ||||||| Sbjct 1061138 GCATAGATTTAGGCCA 1061153 >seq2682 Length=416 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/230 (67%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| || | | || | ||| | ||| ||||| ||| || |||||||| ||| Sbjct 92 TTCCTCCTCTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGA-ATATTATAGTCT 150 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || || | | || || |||||||| ||||| || |||| ||| || ||||| || Sbjct 151 GACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGT 210 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| ||||||||||| || ||| |||||| || Sbjct 211 GGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCA 270 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || || ||||| ||||| | || || | ||| |||||||| Sbjct 271 ACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 >seq2222 Length=3557686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 10522 ATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATA 10581 |||||||||||||||||||| | ||||||||||| |||||| || || | || Sbjct 2663311 ATAGAGGAAATGTGGGAGTAGTGCTATTTAATCATGGTAATGAGGACTTCAAGATTGCAC 2663370 Query 10582 GAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAG 10641 ||| ||| | ||| | |||||||| ||||||||||| ||||||| || | | | | Sbjct 2663371 CAGGTGATCGTATAGCCCAATTAATTTGTGAAAAAATAATATATCCAGAACTTGAAGAGG 2663430 Query 10642 TCGATAGTTTA 10652 | ||||||||| Sbjct 2663431 TAGATAGTTTA 2663441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743474734209280