Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1274 102 8e-17 >seq1274 Length=440581 Score = 102 bits (112), Expect = 8e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||||||| |||||||||| |||| |||||| | ||| || ||||||||||| ||| Sbjct 124141 AAATGTAAGTCCTGGCATTAAACCTCTTTTTTTCAGCCAGAAAATAGCGGCAAAACTACC 124200 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 |||||| |||||||| ||||| ||||||||||||| || ||| Sbjct 124201 GCTAAAGAAAATACCTTCCACTGCAGCAAATGCAACCACACGTTCA 124246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 15922 TTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGT 15981 ||||| | ||| ||| | ||||||||| || | ||| |||||||||| || ||||| Sbjct 123502 TTTATCTTGCATTACTCCCCATTTTTGATACTCTCCTACTTTCTTTTCAAAAAAGTTTGT 123561 Query 15982 TTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| |||||||| || || | |||||||||||||| ||||||| Sbjct 123562 TTTACCTTCTAAAGAGATGTGCTCCATAAAATCAAACGGATTTT 123605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462479861197400