Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq99 89.7 7e-13 >seq99 Length=1303948 Score = 89.7 bits (98), Expect = 7e-13 Identities = 172/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 19430 AAAATATATCTAGGACTTGCTGCATCTTTTCCTCCAGAAAGTCTCGTGCCAAATTGGCCA 19489 || || || | |||||| || ||||| |||||||| | |||||||| |||||||| ||| Sbjct 557690 AAGATGTAACGAGGACTCGCCGCATCCTTTCCTCCGGCGAGTCTCGTACCAAATTGACCA 557749 Query 19490 TCCTCTTCTAAAAGAGGTATGTTATTGGCTCCAACAAAAGTTTGTGCCATTTTAATGATA 19549 || || | | ||||||||| ||| || ||| ||||||| | ||||||||| Sbjct 557750 ATTGGTTGTAGTAAATTTATGTTATTACTTCCTACGAAATTTTGTGCGAGGTTAATGATA 557809 Query 19550 G-TGTCAAATAGATTTTGTTCTCCATGTTTATAATCTGTTTTTTGTGCTACGAAAGCTCC 19608 | || || | ||| ||| ||||| | ||| ||| | || ||||| || | | Sbjct 557810 GTTGACATA-AGAGAAACTTCACCATGATGATATGCTGAATGTTCAGCTACAGAACCAGC 557868 Query 19609 TAATTGGGCAACTTTAATATTATTTTTTCCATTCCATTGTTTTA---ATCCAAAAATTAC 19665 |||||| |||||||| | | | ||| |||| | |||||| || | | | ||| Sbjct 557869 TAATTGTGCAACTTTTACTTCACGTTTGTCATTAC---GTTTTAAACATGTATATAATAC 557925 Query 19666 TTTTCTTTGT 19675 ||| |||||| Sbjct 557926 TTTCCTTTGT 557935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679767161396880